Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g00998 ATGGAAGTAGCTAGCTACATGTATGCCGGAGAAGTGTCAGTGCCTGATAGTTCAATCATGAACAAAAATGGACAAATTGATGACTTTGATCAACCATTATTATTTTGCCAGGACCGAGAGATAGCATCAGAGTCACGGGTACGACGAAAAACACACAAAATTATGAAGTTTAAATATTCATCCAAGTCTGCTGGCCTCTCATCTACACGGAAAGGAATTACTGTTGGGAAATGTGAAACTTACAAGCAATATACACCTTGTGGATGTCAGGAAATGTGTGGGAAGCAATGTCCTTGTCTTCATAATGGATCTTGTTATGAAAAATATTGTGGGTGTTCAAAGCTCTGCAAAAATCGGTTTAGAGGATGTTATTGTGCTATAAGTCAATGTAGAAGTCAACAATGTCCATGCTTTGCAGCAGAACGAGAATGTGACCTAGATGTATGTCGAAATTGTTGGCTTAGTTGTGGCAGTGGTTCATTAGGAGAGCCACCTCGCCATGGAGATGGCCAATGTGGAAATATGAGGCTTCTTTTAAGGCAAAACCAAAGGATTCTATTAGCAAAGTCTGATGTTGAAGGATGGGGAGCCTTCTTAAAGAATCCAGCTAACAAAGATGATTACTTGGGAGAGTTCACGGGTAAACTGATCTCTCATTTAGAAGCAGAAAAGCGTGGGAAAATGTATGATCGTGCAAACTCCTCTTTCCTTTTTAACTTGAATGATCAATATGTTCTTGATGCTTATCGCAAGGAAGACAAGCTGAAATTTGTTAACCACTCAGAAAAACCCAACTGTTATGCAAGGATTATGCTTGTTGGAGGGGATCATCGAGTAGGGATATTTGCCAAGGAACGGATTGAAGCTGGCGAGGAGCGATGTAACATCCCAACTTTTGATAAGTTAATTGTGAGATTTATAGGTTTTAATGTGGTTTGA 939 0.3983 MEVASYMYAGEVSVPDSSIMNKNGQIDDFDQPLLFCQDREIASESRVRRKTHKIMKFKYSSKSAGLSSTRKGITVGKCETYKQYTPCGCQEMCGKQCPCLHNGSCYEKYCGCSKLCKNRFRGCYCAISQCRSQQCPCFAAERECDLDVCRNCWLSCGSGSLGEPPRHGDGQCGNMRLLLRQNQRILLAKSDVEGWGAFLKNPANKDDYLGEFTGKLISHLEAEKRGKMYDRANSSFLFNLNDQYVLDAYRKEDKLKFVNHSEKPNCYARIMLVGGDHRVGIFAKERIEAGEERCNIPTFDKLIVRFIGFNVV. 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g00998 312 SUPERFAMILY SET domain 83 292 IPR046341 -
Seca5g00998 312 Pfam CXC domain 122 153 IPR041355 -
Seca5g00998 312 ProSiteProfiles CXC domain profile. 70 169 IPR026489 -
Seca5g00998 312 Pfam SET domain 194 292 IPR001214 GO:0005515
Seca5g00998 312 Gene3D SET domain 84 294 IPR046341 -
Seca5g00998 312 SMART CXC_2 118 155 IPR033467 -
Seca5g00998 312 FunFam Putative histone-lysine N-methyltransferase EZH2 84 297 - -
Seca5g00998 312 CDD SET_EZH 183 292 - -
Seca5g00998 312 SMART set_7 183 306 IPR001214 GO:0005515
Seca5g00998 312 ProSiteProfiles SET domain profile. 183 298 IPR001214 GO:0005515
Seca5g00998 312 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE E(Z) 1 292 IPR045318 GO:0006338|GO:0042054
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g00998 Seca-Chr5 29349416 29351246 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Seca5g00998 SET 4e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g00998 - K11430 gmx:100795451 433.335