Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g00988 ATGGGGTTTGGAAGTGAAGAAGATGCTTACAATTTCTATTTTTCATATGCCAGATGTCATGGCTTTGCTATAAGGAAAGATGATGTAGGTCGGGATGCGAAAGGCAGAGTTAATATGCGTCAGTATTTATTCAGCAAAGCTGGGTTGAGGGAGCAAAAGCACTTTATGCGGGTAGATCGTAAAAAAGAACACGAGCCTTTAACTCGTGTTAATTGTGAAGCTAAGTTGCGAGTTAGGCATGATTATAAGACTCAGAAATTTAAGGTGGTTTCATATTTTGAGTGTCACAATCATGAGTTAACTCTGACAAAATTTGTTCCTTTAATTCCTTCATATCGTGGCTTGACCGAAGGGGATAAAGCTCAAGTGGATGGATTACATTCTCATGGGGTTAGGCCATGTCAAATAATGGGTTACCTATTGGATCAAAAGGGAGGTTATGTGTAA 447 0.3915 MGFGSEEDAYNFYFSYARCHGFAIRKDDVGRDAKGRVNMRQYLFSKAGLREQKHFMRVDRKKEHEPLTRVNCEAKLRVRHDYKTQKFKVVSYFECHNHELTLTKFVPLIPSYRGLTEGDKAQVDGLHSHGVRPCQIMGYLLDQKGGYV. 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g00988 148 Pfam FAR1 DNA-binding domain 11 101 IPR004330 -
Seca5g00988 148 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 1 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g00988 Seca-Chr5 28962062 28962508 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca5g00988 FAR1 4.3e-14 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g00988 - - ccaj:109794460 199.519