Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g00982 ATGGAAGAAGAGCAAATGAACAAAGTGTGCGAGCCGAAGTGGCTTGAGGATTTTCTAAGCAAAACATTTTTTGACCCATGTACAACTCATCATTTACATAGAAATGAGTTAAGCAATTACTGTATAAACCGCAATCTGTCAGTTTGCAAACACTGTGCATCATCAGGAACTCACCACAATCACAAGATACTAAAAATTTATAGATATAGTTCCAAGGTGGCTGTCCCTCTTGATACTATGCAAAATCATATTGACTGCTCACAAATTCAGCTCTTCATAAGCAATAGAAAATGGGTTATTTCTTTGAAGCCTCTTCCACACAGTGGTTTAGCAAAAGGGAATGAGGCTTTATCATGCAAAGTTTGTAGCAGAAGGTTGGTTGGGTCTGATTTATATCGTTACTGCTCCATTTCTTGCAAGGTTGAAGCTGTTTTAAGGAAGCTTGATGATTCAGTTGCTCCCTTCATTTCCCATCAGAGTCTTCGTCAGATAGAAAAGGAGGAAACTACTAAACCCCCGAAGCGGCGTAACAAAAGAAAGGGAACACCGTGTAGAGCTCCTTTATTCTAA 570 0.393 MEEEQMNKVCEPKWLEDFLSKTFFDPCTTHHLHRNELSNYCINRNLSVCKHCASSGTHHNHKILKIYRYSSKVAVPLDTMQNHIDCSQIQLFISNRKWVISLKPLPHSGLAKGNEALSCKVCSRRLVGSDLYRYCSISCKVEAVLRKLDDSVAPFISHQSLRQIEKEETTKPPKRRNKRKGTPCRAPLF. 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g00982 189 MobiDBLite consensus disorder prediction 164 189 - -
Seca5g00982 189 ProSiteProfiles Zinc finger B-box type profile. 27 66 IPR000315 GO:0008270
Seca5g00982 189 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 5 188 - -
Seca5g00982 189 Pfam PLATZ transcription factor 68 141 IPR006734 -
Seca5g00982 189 SUPERFAMILY B-box zinc-binding domain 32 81 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g00982 Seca-Chr5 28758473 28760027 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF PLATZ Seca5g00982 PLATZ 2.5e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g00982 - - ahf:112791659 190.274