Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g00946 ATGGAAAAGGCAGGTGCTGAACTTCAAAGTGATGCAGCTTCAATGGTGTCAGATCCTGCTCTTATTCATCATCAGACATGTTCTGGAAATGGAAAAGATGACCAGACATCCTTGATTCCACAGTCAAGAAGACCTAGCCTCTCCTCTCTGCAAATACCAACAAGGTCACTAGAAAGTGCATTATCTTCTTCTAGTAAGACAGATGGTCCTACATTGTCAAGTCCAGGTTCCACTAGAGGACTTCCCCCAAGGCCAAATTCTGCCAAAGTCAAGTCCTCTATGAGAAATTTACTTTCTGAGAGAAGTTTTAGGACTAAAACTTATTCACAAGATTGTGAAAGGACAGTTCTGATTGTTCCTGATACTTTACCATCAGATGGTCCTCTGGATAAGCCTTCAACTTCAAGGTCCCTTTCTCTTAATAAGATTTTGTTCCCTTCATCAACAAAAGCAGCACATTCATTACCGGTTACTCCAATTGCAAATTCAGGTGGAGAGACTCTACATGGAAGACATCTAGGGAGTGATTCTGATTTAAGTAAAATGAAAATAAATCAACATATGACTCGATCATTTTCAGTTCCAGTTAATGTCAAAGCCAGTAATTCAAGGCCAAAAGATTCTAGGCGCCTGATTCGTGTAATTTCAGCAAGATCACATCTAGCGACTATTGATGACAGTTCAACTCACAATGCTTCGGCGTCAGAGATTGTCATTGAAGATGATTCTGAGGATATTCCAGAGGAAGAAGCAGTCTGTAGGATTTGTTTGGTGGAGCTTGGGGAAGGAGGGAAAACTCTTAGGATGGAGTGCAGTTGTAAAGGTGAGCTTGCACTTGCTCACCAAGACTGTGCAGTTAAGTGGTTTAGTATCAAAGGAAATAGGACCTGTGATGTCTGCAAGGAGGATGTCCGAAACCTTCCAGTAACACTCTTGAAAATTTCTAATCCTCTAACTGTTGCTCGGCAGCCAATGAATGCACCACAGCAGAGAGAAGTAACACATTACAGATTGCTGTGTAATTTCCTCGGGAATCACCATGCAAGAGAACAATGTTGGCAAGAGAAGTGA 1071 0.4164 MEKAGAELQSDAASMVSDPALIHHQTCSGNGKDDQTSLIPQSRRPSLSSLQIPTRSLESALSSSSKTDGPTLSSPGSTRGLPPRPNSAKVKSSMRNLLSERSFRTKTYSQDCERTVLIVPDTLPSDGPLDKPSTSRSLSLNKILFPSSTKAAHSLPVTPIANSGGETLHGRHLGSDSDLSKMKINQHMTRSFSVPVNVKASNSRPKDSRRLIRVISARSHLATIDDSSTHNASASEIVIEDDSEDIPEEEAVCRICLVELGEGGKTLRMECSCKGELALAHQDCAVKWFSIKGNRTCDVCKEDVRNLPVTLLKISNPLTVARQPMNAPQQREVTHYRLLCNFLGNHHAREQCWQEK. 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g00946 356 SMART ringv_2 252 301 IPR011016 GO:0008270
Seca5g00946 356 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 238 308 IPR013083 -
Seca5g00946 356 CDD RING_CH-C4HC3_MARCH 253 301 - -
Seca5g00946 356 SUPERFAMILY RING/U-box 249 303 - -
Seca5g00946 356 ProSiteProfiles Zinc finger RING-CH-type profile. 245 307 IPR011016 GO:0008270
Seca5g00946 356 PANTHER OS02G0165000 PROTEIN 24 338 - -
Seca5g00946 356 MobiDBLite consensus disorder prediction 1 96 - -
Seca5g00946 356 Pfam RING-variant domain 253 300 IPR011016 GO:0008270
Seca5g00946 356 MobiDBLite consensus disorder prediction 21 81 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g00946 Seca-Chr5 27254379 27258053 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g00946 239 307 C3H Transcription Factor Family AT2G37950 45.833 3.40e-13 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g00946 - - gmx:100779396 471.855