Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g00900 ATGAAATTCGCGAATTGTTCACTCCCCTTTCCTTGCCCTATTTCAGATCCGTCGGAAATTAGGTTACGAGCGTTGGTTGAGAAAAAAAATATGGATGGGAACAAGGACGACGCGTTGAAATGCTTGAAAATCGGTAAAGAGGCATTAGAAAACGGCGATCGTACCCGCGCGTTGAAGTTCGTAACCAAAGCTCGCCGCCTGGACCCCACTCTTCCCGTCGACGATCTATTGTCCGCGATAGAGAACGATGCAGGCGATCAACCCCCTGCAGCTTCCGCTGAGCCGGCGAAGCCCGCCGCGGATAACCCTTCCATCCGCCGAAGGCCTTCTGCAGCAGCCGCGGCGCCAGGGCCTTCGTCGTCGCCCTCACCATCACCAGCCACATTCACTGAGGAGCAAATTTCAATTATCAGGGAAATTAAGCGGAAGAAGAACTATTACGAGATTTTAGGGTTAGAGAAGAATTGCACTGTGGAGGACGTGAGGAAATCTTATAGAAAACTGTCTCTGAAGGTTCATCCTGACAAGAACAAAGCCCCGGGTGCAGAGGAGGCGTTTAAGGCCGTGTCAAAGGCGTTTCAGTGTCTTAGTAATGAAGAGAGTAAGAAGAAGTATGATCTTTCAGGAGAAGATGAATCTGTTTATGAGAGACGTGCTGCGGCGAGGCCAGGGGCGGCTAGGGCTTATAATGGCTACTATGAAGCTGATATTGATGCTGAGGAGATATTTAGGAACTTCTTCTTTGGAGGAATGGCTCCTGCTGCTAATTTTGGAGGGTTTAGTTTTGGACCAGGGATGCCTCATAGGCATGCTGAACATGGCTCTGGTGGTTTCAATGTTCGTGCTCTGGTTCAGTTGCTTCCTGTTCTGCTCATTTTGCTTATAAACTTTTTGCCTGGATCGGATCCAATTTATACACTTTCTCAGAATTATCCTTATGAACATCGAATGACTACACCAAAGGGTGTTAACTATTATGTTAAGTCCACAAAGTTTGCTCAGGATTATCCGCTGGGTAGCCGTGAACGTGACACAGTTGAGGGGAGGGTTGAGAGGGAATACTTTGGCATTCTTCGCCAGAACTGCCAGTTTGAGTTGCAGCGTCGCCAGTGGGGATATATCCGTGAAACCCCACACTGTGATATGCTTCGGAAGTTTGAAGTGGTGAATTGA 1173 0.4825 MKFANCSLPFPCPISDPSEIRLRALVEKKNMDGNKDDALKCLKIGKEALENGDRTRALKFVTKARRLDPTLPVDDLLSAIENDAGDQPPAASAEPAKPAADNPSIRRRPSAAAAAPGPSSSPSPSPATFTEEQISIIREIKRKKNYYEILGLEKNCTVEDVRKSYRKLSLKVHPDKNKAPGAEEAFKAVSKAFQCLSNEESKKKYDLSGEDESVYERRAAARPGAARAYNGYYEADIDAEEIFRNFFFGGMAPAANFGGFSFGPGMPHRHAEHGSGGFNVRALVQLLPVLLILLINFLPGSDPIYTLSQNYPYEHRMTTPKGVNYYVKSTKFAQDYPLGSRERDTVEGRVEREYFGILRQNCQFELQRRQWGYIRETPHCDMLRKFEVVN. 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g00900 390 Gene3D DnaJ domain 141 256 IPR036869 -
Seca5g00900 390 PANTHER AT29763P-RELATED 31 385 - -
Seca5g00900 390 SUPERFAMILY Chaperone J-domain 141 263 IPR036869 -
Seca5g00900 390 MobiDBLite consensus disorder prediction 81 129 - -
Seca5g00900 390 Pfam DnaJ domain 145 206 IPR001623 -
Seca5g00900 390 ProSiteProfiles dnaJ domain profile. 145 209 IPR001623 -
Seca5g00900 390 FunFam Chaperone protein dnaJ 49 141 258 - -
Seca5g00900 390 Pfam Domain of unknown function (DUF1977) 300 370 IPR015399 -
Seca5g00900 390 SMART dnaj_3 144 201 IPR001623 -
Seca5g00900 390 PRINTS DnaJ domain signature 147 165 IPR001623 -
Seca5g00900 390 PRINTS DnaJ domain signature 165 180 IPR001623 -
Seca5g00900 390 PRINTS DnaJ domain signature 181 201 IPR001623 -
Seca5g00900 390 ProSitePatterns Nt-dnaJ domain signature. 186 205 IPR018253 -
Seca5g00900 390 CDD DnaJ 145 198 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g00900 Seca-Chr5 25559838 25561010 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g00900 140 206 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 40.845 1.65e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g00900 K09518 - gmx:100793797 528.865