Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g00889 ATGGCCACACCCACCACTCTCTCCAGAGATGAATCCTCCGACTACGACAGCAGTTCCTCCTCCATAACCGTTCTAGACTCTAGCCGCCGCACCAGTTGGCTGAGCAACCTCAGTTTCAGCAGCCGCCGCCGCAGTAGCAGCAGCTCAGTCTCCCTCTCTTCCTCCATCACCACCACCACCACAGACACCACCTCCCACACCAAGCCACACAAGGCAAACCACGCTGCATGGGAGACCATGCGGCTTCTCCTCCGCGACAACAATGGAAGCATCCGCCTCGACCACTTCCGCCTTCTGCGGCGGCTCGGCGGCGGCGACATTGGGAACGTCTACCTCTGTCAAGTAAGGAACCCTGTGGTTGGTTTGCCGCAGTGCTTGTACGCAATGAAAGTGGTTGACAGAGAAGCACTTGCTGTGAGGAAGAAACTGCAGAGGGCGGAGATGGAGAAGGAGATTTTGGGAATGATTGATCATCCTTTTTTGCCTACTTTATATGCTGAGTTTGATGCTTCTCATTATTCTTGCTTGGTCATGGAGTTTTGCCCTGGTGGTGACTTGTATGCTGCTCGCCAACGCCAGCCACAGAAGCGCTTTACCATCACTTCCGCTAAGTTTTATGCAGCTGAGACACTTGTGGCGCTAGAGTATCTGCACATGATGGGGATAGTGTACAGGGATTTGAAGCCAGAGAATGTGTTGGTAAGGGAAGATGGGCACATTATGCTTTCAGATTTTGATCTCTGTCTTAAATGTGACGTTGTTCCAAAGCTGTTAAGAAGTAAAACCAGATTGGAACGCAGTTTCAAGAGCACAAAGAGGTCAACAACACCTTCTTGTGCTGCACCAATGCAACCTGTTCTGTCATGTTTCTCTGCATCAAACAATAAGAGAAAGAAAGCAGCAACTGTGACAACAGTTATAAGGGAGAATGTTGAAGTCTATGAAGTTGATCCAGAGATAGTGGCAGAGCCCATCAATGCTCGTTCTAAATCATTTGTAGGAACACATGAGTATTTGGCACCAGAGGTGATTTCAGGGCAAGGCCATGGGAGTGCAGTGGATTGGTGGACATTTGGGGTGTTCTTGTATGAAATGTTATATGGTAAAACTCCCTTCAAAGGTGAAAACAATGAGAAAACACTCATAAACATACTCAAGCAACCATTGGTTTTTCCTAAAATTGCAGTTAACAACAGCAAGGAGTTTGAAGAGATGGTTAAGGTTCAAGACCTCATTAGCAAGCTGTTGGTGAAGAATCCCAAGAAGAGAATTGGAAGCTGCATGGGTTCAGTTGAGATCAAGAGGCATGAGTTCTTCAAGGGTGTGAATTGGGCTCTAATTAGATCAGTTAGGCCACCTGAGGTTCCTGCTGAAATGAACAAGATTAGGAGTAGTAGGGTGTTGTTACCCAAACTAAGCAAGAAAGACAAGGATCAACCTTATCAGATTAGTCATAATTTTGACTACTTTTAA 1473 0.4678 MATPTTLSRDESSDYDSSSSSITVLDSSRRTSWLSNLSFSSRRRSSSSSVSLSSSITTTTTDTTSHTKPHKANHAAWETMRLLLRDNNGSIRLDHFRLLRRLGGGDIGNVYLCQVRNPVVGLPQCLYAMKVVDREALAVRKKLQRAEMEKEILGMIDHPFLPTLYAEFDASHYSCLVMEFCPGGDLYAARQRQPQKRFTITSAKFYAAETLVALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDLCLKCDVVPKLLRSKTRLERSFKSTKRSTTPSCAAPMQPVLSCFSASNNKRKKAATVTTVIRENVEVYEVDPEIVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTFGVFLYEMLYGKTPFKGENNEKTLINILKQPLVFPKIAVNNSKEFEEMVKVQDLISKLLVKNPKKRIGSCMGSVEIKRHEFFKGVNWALIRSVRPPEVPAEMNKIRSSRVLLPKLSKKDKDQPYQISHNFDYF. 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g00889 490 Gene3D Transferase(Phosphotransferase) domain 1 327 457 - -
Seca5g00889 490 MobiDBLite consensus disorder prediction 50 66 - -
Seca5g00889 490 MobiDBLite consensus disorder prediction 1 28 - -
Seca5g00889 490 FunFam serine/threonine-protein kinase D6PK-like 327 457 - -
Seca5g00889 490 FunFam protein kinase PINOID 2 94 180 - -
Seca5g00889 490 Gene3D Phosphorylase Kinase; domain 1 94 180 - -
Seca5g00889 490 FunFam protein kinase PINOID 181 249 - -
Seca5g00889 490 SMART serkin_6 96 439 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g00889 490 Pfam Protein kinase domain 329 439 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g00889 490 Pfam Protein kinase domain 97 251 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g00889 490 ProSiteProfiles Protein kinase domain profile. 96 439 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g00889 490 PANTHER FLIPPASE KINASE 1-RELATED 15 460 - -
Seca5g00889 490 Gene3D Transferase(Phosphotransferase) domain 1 181 250 - -
Seca5g00889 490 ProSitePatterns Serine/Threonine protein kinases active-site signature. 222 234 IPR008271 GO:0004672|GO:0006468
Seca5g00889 490 Coils Coil 129 149 - -
Seca5g00889 490 SUPERFAMILY Protein kinase-like (PK-like) 77 459 IPR011009 -
Seca5g00889 490 MobiDBLite consensus disorder prediction 50 73 - -
Seca5g00889 490 CDD STKc_phototropin_like 94 457 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g00889 Seca-Chr5 25019883 25022312 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g00889 1 490 AGC Kinase Gene Family AT2G26700 57.885 0.0 610
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Seca5g00889 Pkinase 6.9e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g00889 K08286 - gmx:100777988 723.005