Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g00886 ATGAACCAAAGGAGAGTGAATATAATCTCTGCTATATCAGTGATTGCACTGATCATCACCATAATTGTTGCTCGTGTCACGTTGAAGCTCTCAAGTGCTTTCTTCCTCATATGTGGAGCTGGTGTTGCTGTGATTCTTGCAGTCTTTGCTTTTGTATTTGTCAGCTTAAGTTACAATCGCAGAAGGAGGCTTTTGGAGTCACAGTTGAAATCTGAAGGCAGAGAGCTTCGAATAGAGTACAGTTTCTTAAGGAAAGTTGCAGGGGTTCCCACAAAGTTCAGATACAAGGAGCTTGAGGAAGCAACCGATGGTTTTCAATCACTTCTTGGAAGAGGCTCCTCTGCTTCAGTCTTCAAAGGGATTCTCAATGAGGGCACTTATGTTGCTGTGAAAAGAATTGATGCAGAGGAAAGAGGAGAAAAGGAGTTTAAATCAGAAGTTGCAGCTATAGCTAGTGTGCATCATGTGAATCTTGTGAGGCTATTGGGCTATTGTAATGCTCCAACAGCACCTAGGTACCTTGTTTATGACTATATCTCAAATGGGTCTTTGGATTGTTGGATTTTTCCAAAAAGGGAATCTCAAAGCTTGTCATGGAATTTGAGGTATAAAGTTGCTATTGATGTTGCTAAGGGACTTGCTTACCTTCACCATGATTGTAGATCAAGGATCTTACACCTTGATGTAAAGCCAGAAAATATACTCTTGGATGAGAATTATAGAGCACTTGTTTCTGATTTTGGTCTCTCAAAGCTTATTGGTAAGGATGAGAGCCAAGTTGTGTCTACAATTAGGGGAACAAGAGGGTACTTGGCCCCTGAATGGCTCTTAGAACAGGGTGTTTCAGATAAAACTGACATCTATAGTTATGGGATGGTTCTATTAGAGATTGTTGGAGGGAGAAAAAATGTGTCTTTGGTGGAAGATGAAAAGGACAAGTCCAAGAGGAAATGGCAGTATTTTCCAAAGATTGTGAATGAGAAAGTGAGGGAAGGAAAATTGATGGAAATTGTTGATCATAGATTAATGGAATGTGGGGGTGTTGATGAGAGAGAGGTGAGAACATTGGTTTATGTTGGTTTGTGGTGTGTGCAAGAGAAGCCAAGGTTGAGGCCTAGTATGGTTCAAGTTGTTGATATGCTTGAAGGGCGTGTGAGGGTGGAGGAGCCACCTGATACTAGAATGATTCTTGTTGATTTGCTATCTGTGGATGAAGATGCAACAGGTAGTAATAACATGCCAAGGTTGGACTCTATGTCCGGTCAAAGAACACAAAGCAATGTTGATTGTACATCTACTACCTATTCGTTTGCTACTACTGTTTTGTCTGGAAGATAG 1338 0.4088 MNQRRVNIISAISVIALIITIIVARVTLKLSSAFFLICGAGVAVILAVFAFVFVSLSYNRRRRLLESQLKSEGRELRIEYSFLRKVAGVPTKFRYKELEEATDGFQSLLGRGSSASVFKGILNEGTYVAVKRIDAEERGEKEFKSEVAAIASVHHVNLVRLLGYCNAPTAPRYLVYDYISNGSLDCWIFPKRESQSLSWNLRYKVAIDVAKGLAYLHHDCRSRILHLDVKPENILLDENYRALVSDFGLSKLIGKDESQVVSTIRGTRGYLAPEWLLEQGVSDKTDIYSYGMVLLEIVGGRKNVSLVEDEKDKSKRKWQYFPKIVNEKVREGKLMEIVDHRLMECGGVDEREVRTLVYVGLWCVQEKPRLRPSMVQVVDMLEGRVRVEEPPDTRMILVDLLSVDEDATGSNNMPRLDSMSGQRTQSNVDCTSTTYSFATTVLSGR. 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g00886 445 MobiDBLite consensus disorder prediction 408 427 - -
Seca5g00886 445 ProSitePatterns Serine/Threonine protein kinases active-site signature. 224 236 IPR008271 GO:0004672|GO:0006468
Seca5g00886 445 Pfam Protein kinase domain 107 379 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g00886 445 Gene3D Transferase(Phosphotransferase) domain 1 179 395 - -
Seca5g00886 445 FunFam Putative receptor-like protein kinase 70 178 - -
Seca5g00886 445 ProSitePatterns Protein kinases ATP-binding region signature. 109 131 IPR017441 GO:0005524
Seca5g00886 445 FunFam Putative receptor-like protein kinase 179 389 - -
Seca5g00886 445 SMART serkin_6 103 381 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g00886 445 Gene3D Phosphorylase Kinase; domain 1 68 178 - -
Seca5g00886 445 ProSiteProfiles Protein kinase domain profile. 103 385 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g00886 445 SUPERFAMILY Protein kinase-like (PK-like) 85 382 IPR011009 -
Seca5g00886 445 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 42 392 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g00886 Seca-Chr5 24782568 24783926 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g00886 1 393 Receptor kinase-like Gene Family AT5G20050 63.840 2.19e-178 504
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Seca5g00886 Pkinase 3.9e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g00886 - - gmx:100791152 691.804