Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g00883 ATGTTTTCCCACAATGGCAATGATCCAATCTCCTCTTCTGACCAAGCATTTCACTGCATGCCTTTTGACTTTGAAAGCAACATTAACATTAACACCACCTCATCATCATCAAATTCAAAACAAGAAACCAATTCTGACCTTCTTTTCCCTCCTTTCTCCTTTCTTCATTTCCCTTCTCCTTTTGAAGACGATGAAATTTTCCTCGAACAACAACACCTCGATTTCCTCTTTCAATTTCAGCATCAACAGCTTGAGCCTGAACCTGAGCCAGAGCCAGTTGTTAACATTGAAGTTTCAAAACACATCAAAACGGGGCTGCAGATCCCTAGAAAAAGAACTGGCAAGAGAGACAGGCACAGCAAAATTAACACAGCAAGAGGACCAAGGGATCGAAGAATGAGACTCTCTCTCGAAGTTGCTAGAAGGTTCTTTGGTCTGCAAGATTTGTTAGGCTTTGATAAAGCAAGCAAGACTGTGGAGTGGTTACTGAACCAAGCCAAAGTTGAGATCAATCAATTGGCTTTGAAGAGTGTTGCTTCTTCAACTAATTCTGAATGTGAAGGTGTCTCTAGCCTTGAAGAGATTGTAGTGAATAATGGGAACAAGAAAAAAGAGATGAAGGAGGCACAAGCTGTGGTGAAGAGAAAGGTAAAGCATTCTAGAAGGAGTGCAATATTCCATCCTCTTGCTAGGGAGTGTAGAAAAAGGGCAAGAGAAAGGGCAAGAGAGAGGACAAAGGAAAAATTGAGATCAAAGCAATGTAGAGAGGAGGAAAATAATCATAAATTGATGAGTCAATTGGGTATTGATAATCCCTTTGGAACTGGAGAAGAATGTGGAACACAGAGTAGCCAAAGTGTGATTAATCCTTCCCTGAATTTGGTCACTGAGGCTAAAAAACTAAGCTCTCTCTCAAAGGAGCATTTGAGGAGTACTACTGTAGAGGCCAACATGATGCATAATGATTCTTTGGATTTTGTGAACAAAAGGAGCCCATCTATGATTTTAAGTTCTCTGAATAACTCTGGACTACTTCAAGAAATAAGCCTCAATTAG 1056 0.4025 MFSHNGNDPISSSDQAFHCMPFDFESNININTTSSSSNSKQETNSDLLFPPFSFLHFPSPFEDDEIFLEQQHLDFLFQFQHQQLEPEPEPEPVVNIEVSKHIKTGLQIPRKRTGKRDRHSKINTARGPRDRRMRLSLEVARRFFGLQDLLGFDKASKTVEWLLNQAKVEINQLALKSVASSTNSECEGVSSLEEIVVNNGNKKKEMKEAQAVVKRKVKHSRRSAIFHPLARECRKRARERARERTKEKLRSKQCREEENNHKLMSQLGIDNPFGTGEECGTQSSQSVINPSLNLVTEAKKLSSLSKEHLRSTTVEANMMHNDSLDFVNKRSPSMILSSLNNSGLLQEISLN. 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g00883 351 ProSiteProfiles R domain profile. 231 248 IPR017888 -
Seca5g00883 351 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 46 287 IPR005333 GO:0003700
Seca5g00883 351 Pfam TCP family transcription factor 114 251 IPR017887 -
Seca5g00883 351 ProSiteProfiles TCP domain profile. 115 173 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g00883 Seca-Chr5 24613226 24615788 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g00883 20 245 TCP Transcription Factor Family AT3G18550 35.662 5.06e-31 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Seca5g00883 TCP 3.8e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g00883 - - pvu:PHAVU_009G200600g 245.358