Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g00877 ATGGCTCCTCCATGGGTTCAAGAGCTCCATCTCCGTCACTTGAGTATTCCTGTGACTATTGATAAAATGTTTTCAGTTACCCCATCGAGGCCAATTCCCGTTAAACCAGGTGACAGCTTATACCTTTCGAACCTCGATGACATGATTGGAGCACGTGTATTCACACCAACAGTGTACTTTTATCAACCAGACAACATGAGTTCTTGCCAAAAGCCTGTGACTAAAACACTACGCGGTGCTCTCGCAGATGTTTTAGTGCCTTACTATCCTCTTTCTGGCAGGCTTAGAGAGACCAAGAATGGTAAGCTTGAAGTGTTTTTTGGACCAGAACAAGGAGCACTCATGGTTGAGGCACGATCTAATATTGCCTTATCTGAACTAGGAGACCTCACAGCTCCAAACCCAGCTTGGGGACCTTTGATCTTCAAATTTCCCAATGAAGAACAATACAAAGTCCTTGAAATGCCATTGGTCATTGCTCAGGTTACCCTATTCAGCTGTGGTGGCTTTAGCCTTGGTTTGAGGCTCTGCCATTGCATCTGTGATGGCCTAGGAGCTATGCAGTTCCTAGGTGCATGGGCTGCAACAGCAAAAACAGGGAAGCTAGTCACAGACCCTGAGCCCTGTTGGGACAGGGAAATGTTTAGGCCTCGTGATCCACCAGTGGTGAAATTTCCACACATGGAGTTCATGAGAATTGATGAGGGCTCTAACCTGACAATGACACTATGGCAAACAAAGCCTGTTCAAAAGTGTTACAGGATCAAGCGTGAGTTCCAAAACTGCTTGAAATCCCTTGCTCAGCCGATTGATGCTGCAGGTTGCACCACTTTTGATGCCATGGCAGCTCATATTTGGAGATCATGGGTGAAAGCCCTTGATGTAAGACCATTAGATTACCAGCTTAGGCTAACATTTTCAGTCAATGCTCGGCAGAAGCTTAGAAACCCACCACTGAAAGAAGGGTTTTATGGCAATGTGGTATGTGTTGCATGCACAACAAGCACTGTTTCAGAGCTTGTACATGGACAGCTCCCAGAGACTACCCGTTTGGTTCGTGAAGCCAGACAGTGTGTCTCAGAAGAGTATTTGAGATCCACAGTGGATTATGTTGAAGTGGATAGGCCAAGGCAACTTGAGTTTGGAGGTAAACTAACAATAACTCAATGGACCAGATTCTCAATATACAAGTGTGCAGATTTTGGGTGGGGTAGGCCTCTCTATGCTGGCCCTATAGATTTAACACCCACACCTCAAGTTTGTGTATTTCTACCAGAAGGGGAAGCTGATTGTAATGGCTCTATGATAGTGTGCATATGCTTGCCTGAGTCTGCTGCTCAGAAGTTTACACAAGCCTTGTTGCTCGATTCAGTGTTGACACAAACTTTGTGCTAA 1395 0.4552 MAPPWVQELHLRHLSIPVTIDKMFSVTPSRPIPVKPGDSLYLSNLDDMIGARVFTPTVYFYQPDNMSSCQKPVTKTLRGALADVLVPYYPLSGRLRETKNGKLEVFFGPEQGALMVEARSNIALSELGDLTAPNPAWGPLIFKFPNEEQYKVLEMPLVIAQVTLFSCGGFSLGLRLCHCICDGLGAMQFLGAWAATAKTGKLVTDPEPCWDREMFRPRDPPVVKFPHMEFMRIDEGSNLTMTLWQTKPVQKCYRIKREFQNCLKSLAQPIDAAGCTTFDAMAAHIWRSWVKALDVRPLDYQLRLTFSVNARQKLRNPPLKEGFYGNVVCVACTTSTVSELVHGQLPETTRLVREARQCVSEEYLRSTVDYVEVDRPRQLEFGGKLTITQWTRFSIYKCADFGWGRPLYAGPIDLTPTPQVCVFLPEGEADCNGSMIVCICLPESAAQKFTQALLLDSVLTQTLC. 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g00877 464 Gene3D - 15 232 IPR023213 -
Seca5g00877 464 Gene3D - 238 453 IPR023213 -
Seca5g00877 464 Pfam Transferase family 17 451 - -
Seca5g00877 464 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 26 449 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g00877 Seca-Chr5 24178819 24180213 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g00877 30 454 Monolignol Biosynthesis Gene Families AT5G48930 30.963 2.23e-53 183
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g00877 K15400 - gmx:100802814 848.58