Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g00870 ATGGCCATTCTACCTTTCATGCTTGTTGTCAACATTCTTTTCTTTTCCTCCCAAATTTCCTGGGCAAATGATAAAATTACCCAATTTCAATCACTTGTTGATGGAAGAACATTGGTTTCCCAAGATGGAACATTTGAGTTGGGTTTCTTCAATCCAGGTAGTTCCACAAACAGCTACCTAGGAATCTGGTTCAAAAATGTTCCACTAAAAACTTTTGTTTGGGTTGCCAACCGTGACCATCCAATAATCAATGACAAATCTGGCAAGTTAAGCATAAGTAAAGAGGGAAACCTTGTCCTTCTAAGCAATAATGGCATAGCTCATTGGTCAACAAATGCAACAACAAAAGGGTCAAGTGTCATAGCTCAACTCTTAGATTCCGGAAACTTTGTTCTAAGAGATGAGAAAGACAATGATCCTAAAGGTTATTTGTGGCAGAGCTTTGACTATCCTACTGATACAATTTTGCCTGGAATGAAGCTACGAGTGAACCTAACAAGTGGTCTTGACACGCACCTAACAGCTTGGAAGAATTGGGATGACCCATCCTCTGGTCACCTTATTTACGGCTTTAAAAGAAGTAACATTCCTCGAATGGAGATGTGGAATGGCACATCAATGCTCTATAGAAGTGGACCTTGGAATGGCAACATATTTAGTGCTACACATTCTTTACTGTTCGATGTAGTTTACGAGAACAACAAGGATGAGTATTATTTAAGATACAAACCCAAGGATCTGCCACCGATTTCTAGAATTGTCATCAACCAAACCGTTTATGCTCTCCAGCGTTTCAAATGGATTGAAAGGAATCAAACATGGACACAGTATGAGCATGCGAATATTCCGAATGATGATTGTGACAACTACAAGCGTTGTGGCTCATTTGGGATCTGTGCGATGAAGGGTGAATCCCCTGTGTGCGAGTGTTTAAAAGGATTCGCCCCAAAATCGCCTCAGAACTGGAGTGAAGGGTGTGTGCGCAATGAAACTTGGGGGTGTAAGGAGAAGAATAAAGACGGTTTCAACCAACTTCAAAACATGAAGCTCCCAGACACCAATAAATCTTGGATTGATAGAAGTATGACACTTGAGGAATGCAAGGCAAGATGCTGGGAAAATTGTTCTTGTATGGCTTATGCAAACTCAGACATAACTGGAGATGGAAGTGGCTGCATCATCTGGTTCGATGATCTATTGGACTTGAGACGATTAAAAAAAATTGCTGGGCAAGATCTGTATGTTAGATTGGCGGTCTCCCAAATAGTCCTCTGTCAATCAAACCGGGATGCAAAAGATGGTTCCAAGAAAGTGGTGGTTGTGGTCATAGCCAGTGTTTCATCAATTTTTGTGATGCTTTTAGCTTTCACGTTTATTTATTGGAGGAGCATAACCAAATCTAGAGGGAACACGAGAAAAGTAAAGAAAAACGAAAGCAAACATGAAGATCTAGAGCTACCATTGTTTGATTTTGATACAATAGCATGTGCCACTAATGACTTCTCAAATGACAATAAACTTGGAGAAGGTGGTTTTGGTCCAGTGTATAGGGGCACACTGCCAGATGGACAAAACGTCGCTGTCAAAAGGCTTTCCCATAGCTCTACACAAGGAATAAAAGAATTTAAGAACGAGGTTATATTTTGTTCCAAACTTCAGCACCGAAACTTGGTTAAGGTCCTTGGTTGTTGCATTGAAGAACAAGAGAAATTACTCATCTATGAATATATGCCCAATAAAAGCTTAGACTTCTTTCTATTCGATTCTTCTCAAAGTAAATTTCTGGATTGGTCTACGCGCTTCAATATTTTGTGTGGAATTGCTCGGGGTCTTCTTTACCTTCACCAAGACTCCAGATTAAGGATCATACACAGAGATTTAAAAGCAAGTAATATTTTATTAGATAATGATATGAATCCCAAAATTTCGGATTTTGGCTTGGCTCGGATGTGCGGGGGAGATCAGATTGAAGGAAACACAAGCAAAGTTGTTGGTACATATGGTTATATGGCTCCTGAATATGCAATTGATGGGATATTCTCCATCAAGTCTGATGTATATAGCTTTGGAATTTTATTATTAGAGATTTTAAGTGGAAAGAAAAATAAAGGACTTTCTTATTCAAACCACAACTACAACCTTATTGGATATGCATGGAGCTTATGGAAAGAGTGCAATGCATTGAAATTCATTGATACTTATCTAGAAGGCTCATACATTCCATCAGAAGCTTTACGATGCATTCATATTGGTCTTTTATGTGTGCAACATCAACCAGATGATAGACCAACTATGTCATCAGTGCTTTTAATGTTGACTAGTGAAAGCATTTTACCTCAACCAAAAGAGCCCGCTTTCTTAATAGAAAAAGATTCAAGTAAGGAAGAATCCACTTCTGGACAAAAGATGTACCATTCAACTAATGAAGTCACTGTCTCGGTGTTGGAACCTAGATAG 2457 0.3903 MAILPFMLVVNILFFSSQISWANDKITQFQSLVDGRTLVSQDGTFELGFFNPGSSTNSYLGIWFKNVPLKTFVWVANRDHPIINDKSGKLSISKEGNLVLLSNNGIAHWSTNATTKGSSVIAQLLDSGNFVLRDEKDNDPKGYLWQSFDYPTDTILPGMKLRVNLTSGLDTHLTAWKNWDDPSSGHLIYGFKRSNIPRMEMWNGTSMLYRSGPWNGNIFSATHSLLFDVVYENNKDEYYLRYKPKDLPPISRIVINQTVYALQRFKWIERNQTWTQYEHANIPNDDCDNYKRCGSFGICAMKGESPVCECLKGFAPKSPQNWSEGCVRNETWGCKEKNKDGFNQLQNMKLPDTNKSWIDRSMTLEECKARCWENCSCMAYANSDITGDGSGCIIWFDDLLDLRRLKKIAGQDLYVRLAVSQIVLCQSNRDAKDGSKKVVVVVIASVSSIFVMLLAFTFIYWRSITKSRGNTRKVKKNESKHEDLELPLFDFDTIACATNDFSNDNKLGEGGFGPVYRGTLPDGQNVAVKRLSHSSTQGIKEFKNEVIFCSKLQHRNLVKVLGCCIEEQEKLLIYEYMPNKSLDFFLFDSSQSKFLDWSTRFNILCGIARGLLYLHQDSRLRIIHRDLKASNILLDNDMNPKISDFGLARMCGGDQIEGNTSKVVGTYGYMAPEYAIDGIFSIKSDVYSFGILLLEILSGKKNKGLSYSNHNYNLIGYAWSLWKECNALKFIDTYLEGSYIPSEALRCIHIGLLCVQHQPDDRPTMSSVLLMLTSESILPQPKEPAFLIEKDSSKEESTSGQKMYHSTNEVTVSVLEPR. 819
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g00870 818 SUPERFAMILY Protein kinase-like (PK-like) 482 772 IPR011009 -
Seca5g00870 818 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 577 780 - -
Seca5g00870 818 ProSiteProfiles PAN/Apple domain profile. 334 418 IPR003609 -
Seca5g00870 818 Pfam D-mannose binding lectin 71 177 IPR001480 -
Seca5g00870 818 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 465 576 - -
Seca5g00870 818 MobiDBLite consensus disorder prediction 790 818 - -
Seca5g00870 818 CDD B_lectin 30 151 IPR001480 -
Seca5g00870 818 SMART serkin_6 501 772 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g00870 818 Pfam Protein tyrosine and serine/threonine kinase 504 769 IPR001245 GO:0004672|GO:0006468
Seca5g00870 818 ProSiteProfiles Bulb-type lectin domain profile. 23 145 IPR001480 -
Seca5g00870 818 ProSitePatterns Serine/Threonine protein kinases active-site signature. 622 634 IPR008271 GO:0004672|GO:0006468
Seca5g00870 818 CDD PAN_AP_plant 335 418 - -
Seca5g00870 818 Gene3D Phosphorylase Kinase; domain 1 462 576 - -
Seca5g00870 818 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 19 148 - -
Seca5g00870 818 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 10 763 - -
Seca5g00870 818 ProSiteProfiles EGF-like domain profile. 283 320 IPR000742 -
Seca5g00870 818 MobiDBLite consensus disorder prediction 799 818 - -
Seca5g00870 818 CDD STKc_IRAK 507 773 - -
Seca5g00870 818 PIRSF SRK 1 818 IPR024171 GO:0004674
Seca5g00870 818 SUPERFAMILY alpha-D-mannose-specific plant lectins 72 182 IPR036426 -
Seca5g00870 818 Gene3D Transferase(Phosphotransferase) domain 1 577 783 - -
Seca5g00870 818 Pfam Domain of unknown function (DUF3403) 773 818 IPR021820 GO:0004674
Seca5g00870 818 Pfam PAN-like domain 334 402 IPR003609 -
Seca5g00870 818 ProSiteProfiles Protein kinase domain profile. 501 778 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g00870 818 Gene3D Hepatocyte Growth Factor 334 416 - -
Seca5g00870 818 Gene3D - 17 148 IPR036426 -
Seca5g00870 818 SMART ntp_6 337 417 IPR003609 -
Seca5g00870 818 SMART blect_4 29 151 IPR001480 -
Seca5g00870 818 Pfam S-locus glycoprotein domain 209 318 IPR000858 GO:0048544
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g00870 Seca-Chr5 23707637 23711387 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g00870 427 787 Receptor kinase-like Gene Family AT4G23190 52.055 1.33e-127 392
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca5g00870 PK_Tyr_Ser-Thr 9.5e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g00870 - - gmx:100792537 1049.65