Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g00863 ATGTCATTGAAGATTCTCCTCCACGCTTGGTGGCGTGTGGCAACTGTTATCTTCTTTACTACTACGCTTGTTACACAACTGACTGAGCGAGTCAACGCGGAACCGACTCAGGACAAGCAAGCCCTCCTCGCTTTCATTTCCCGAACCCCACACGCGAACCGAGTCCAATGGAACGCTTCCGACTCGGCTTGCAACTGGTTTGGTGTCCAATGCGACGCTTCACGTTCCTTCATTCTCTCTCTTCATCTTCCCGCCGTTGGCCTCGTGGGTCCCATCCCACCCAACACCATCGGTCGTCTCACCCAACTCCGCGTCCTTAGTCTCCGCTCCAACGGCCTCACCGGCGAGATCCCTGCAGATTTCTCCAATCTCACTCTCCTCCGTAACCTCTACCTCCAGAACAACAAATTCTCCGGCGAGTTTCCCACTAGCTTGACTCGGATGACTCGGTTGACTCGCCTAGAACTTTCATTCAACAACTTCACAGGCACTATCCCTTTCTCAATCAACAATCTCACCCACTTGACCGGTCTTTTCTTGGAAAATAACCGTTTCTCCGGTAACCTTCCAAGCATTACAGCCAAATTAGTCAACTTCAATGTCTCCAATAACCGCCTCAACGGTTCCATCCCAAAGACACTCTCCAATTTCCCTGCATCGTCCTTCGCCGGAAACCTAGATCTCTGTGGAGGACCATTGAAACCGTGCAACCCGTTCTTCCCCGCTCCGGCGCCGTCACCTTCCGCCGTTTCACCTCCGACTCATCTCAACAACAAGTCCAAGAAGCTCTCCACTGCCGCCATTGTCGCAATTGCGGTCGGGTCTGCCGTGGTTGCGATTCTGATTCTGTTTCTAATCCTCTTGCTTTGCTGTCGCCGGCGTCGCCGACCGGCGAAGCCACCGCAGGCTGTGGTGGCGGCACGGGCGATGCCGGCGGCAGAGGGAGGGACCTCGTCTTCGAAGGATGATGTTACCGGTTCGGCGGAGGCTGCAGAGAGGAACAAGCTGATGTTCTTGGAAGGTGGGGTTTATAGCTTCGATTTGGAGGATTTGTTGAGGGCTTCTGCGGAGGTTTTGGGAAAGGGAAGCATGGGGACTTCTTATAAGGCGGTTTTGGAGGATGGGACTACTGTTGTGGTGAAGAGGTTGAAGGATGTGGTTGTTACGAAGAAAGAATTCGAGACGCAAATGGAAGTTATTGGGAAGATTAAGCATGAGAATGTGGTTCCTCTTAGAGCGTTTTACTTCTCAAAGGATGAGAAATTGCTTGTTTACGATTACATGGCTGCTGGGAGTTTGTCTGCTCTGCTTCACGGGAGCAGAGGGTCTGGGCGAACACCATTAGACTGGGACAGCCGAATGAAAATAGCAATTGGAGCGGCAAGAGGCTTAGCATGCTTACACGTGTCAGGAAAAGTGGTCCACGGCAACATCAAATCCTCCAATATCCTCCTCCGTCAAAACCACGAACCCTCCGTTTCGGACTTCGGACTCAACCCGATATTTGGAAACTCCGCCCCGCCTAACCGGGTCGCGGGCTATCGGGCCCCGGAGGTTCTAGAAACCCGAAAGTCCACCTTCAAATCTGACGTGTACAGTTTTGGCGTTTTGCTGCTGGAGCTTTTAACTGGAAAAGCACCGAACCAAGCTTCACTAGGTGAAGAGGGCATTGACCTTCCACGATGGGTGCAATCCGTGGTTCGCGAAGAATGGACCGCTGAAGTGTTCGATGCCGAACTCATGAGGTTCCATAACATTGAGGAAGAGATGGTTCAGTTGTTGCAAATTGCGATGACGTGCGTTTCGCTTGTGCCAGATCAGAGGCCCACTATGCAAGAAGTGGTGCGCATGATTGAAGATATTAACCGCAGCGAGACCGATGAAGGGTTGCGCCAATCGTCTGATGATCCTTCTAAAGGATCGGACGGTCACACGCCCCCTCAAGAGTCTAGGACGACACCTAGATCGGACACGTCGTAG 1980 0.5242 MSLKILLHAWWRVATVIFFTTTLVTQLTERVNAEPTQDKQALLAFISRTPHANRVQWNASDSACNWFGVQCDASRSFILSLHLPAVGLVGPIPPNTIGRLTQLRVLSLRSNGLTGEIPADFSNLTLLRNLYLQNNKFSGEFPTSLTRMTRLTRLELSFNNFTGTIPFSINNLTHLTGLFLENNRFSGNLPSITAKLVNFNVSNNRLNGSIPKTLSNFPASSFAGNLDLCGGPLKPCNPFFPAPAPSPSAVSPPTHLNNKSKKLSTAAIVAIAVGSAVVAILILFLILLLCCRRRRRPAKPPQAVVAARAMPAAEGGTSSSKDDVTGSAEAAERNKLMFLEGGVYSFDLEDLLRASAEVLGKGSMGTSYKAVLEDGTTVVVKRLKDVVVTKKEFETQMEVIGKIKHENVVPLRAFYFSKDEKLLVYDYMAAGSLSALLHGSRGSGRTPLDWDSRMKIAIGAARGLACLHVSGKVVHGNIKSSNILLRQNHEPSVSDFGLNPIFGNSAPPNRVAGYRAPEVLETRKSTFKSDVYSFGVLLLELLTGKAPNQASLGEEGIDLPRWVQSVVREEWTAEVFDAELMRFHNIEEEMVQLLQIAMTCVSLVPDQRPTMQEVVRMIEDINRSETDEGLRQSSDDPSKGSDGHTPPQESRTTPRSDTS. 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g00863 659 Pfam Leucine rich repeat 92 137 IPR001611 GO:0005515
Seca5g00863 659 CDD STKc_IRAK 359 621 - -
Seca5g00863 659 Pfam Protein kinase domain 356 616 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g00863 659 SUPERFAMILY Protein kinase-like (PK-like) 357 618 IPR011009 -
Seca5g00863 659 Gene3D Ribonuclease Inhibitor 196 236 IPR032675 -
Seca5g00863 659 SUPERFAMILY L domain-like 57 219 - -
Seca5g00863 659 MobiDBLite consensus disorder prediction 620 638 - -
Seca5g00863 659 FunFam pollen receptor-like kinase 1 322 427 - -
Seca5g00863 659 FunFam Probable inactive receptor kinase RLK902 35 193 - -
Seca5g00863 659 Gene3D Ribonuclease Inhibitor 35 193 IPR032675 -
Seca5g00863 659 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 428 632 - -
Seca5g00863 659 ProSiteProfiles Protein kinase domain profile. 353 621 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g00863 659 MobiDBLite consensus disorder prediction 620 659 - -
Seca5g00863 659 Gene3D Phosphorylase Kinase; domain 1 319 427 - -
Seca5g00863 659 Pfam Leucine rich repeat N-terminal domain 36 72 IPR013210 -
Seca5g00863 659 Gene3D Transferase(Phosphotransferase) domain 1 428 641 - -
Seca5g00863 659 MobiDBLite consensus disorder prediction 639 659 - -
Seca5g00863 659 PANTHER OS05G0588300 PROTEIN 17 631 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g00863 Seca-Chr5 23463170 23466519 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g00863 13 642 Receptor kinase-like Gene Family AT5G58300 53.052 0.0 644
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Seca5g00863 Pkinase 4.9e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g00863 - - gmx:100806857 958.747