Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g00852 ATGGCATCACAAGGAGAACTAAGCATGGATTGCAAGCCCTACAGCTATTCCATGCTGCTTAAATCATTTGCAGATCAAACTGATCAAACCTACAAGCTTGAAGAGTTCCTTTCTCGTTTAGAGGAAGAACGTCTCAAGATTGACGCCTTCAAGCGTGAGCTTCCTCTCTGCATGCAACTCCTCAACAACGCTATGGAAGCTTCTAGGCAGCAACTTCATGCGTTCAGATCAAGTCAAGGCACAAGGCCAGTTTTGGAAGAATTCATACCGATGAAGCATCCAAATTCTCAAGAAAACTCTGAGAAGGTGATAAACATATCTGATAAGGCGAATTGGATGACATCTGCTCAATTATGGAGCCAAGCAAGCGAAGGATTATCCAAATCACAATCCTCTGCAATTACATCTCCTAAAGAAACTGAAATTGGATTCAGCGTAAGCCCTAAGCTAGCTCTTGATAACAACAAACATAGAAATGGAGGAGGAGGAGCGTTTTTACCGTTCTCAAAAGATCGAAACTCCTCTTCCTTCCAAGGATTACGAGCTCTTCCTGAGTTAGCCCTTGCCTCTCCTGAGAAAGAAATTCAGGACAAGAATTGTGCGGAAGCAGAGACTGGAGGAGTGTCATGTTCCAAGAGGGAGAACTCAACCAAAGGTGTAGTTGTTGATCAAGGAAAAGGTGCAGTTACAGTTACATCTGAAGCACAAACAACCACAACAACCACCTCCAATGGCCAAACTCATAGAAAAGCAAGAAGGTGCTGGTCACCAGACTTGCACCGTCGATTTGTTAATGCTCTTCAAATGCTCGGTGGATCTCAAGTGGCCACGCCAAAACAAATTAGGGAGTTGATGAAGGTTGACGGTTTGACCAATGATGAAGTTAAAAGTCATCTCCAGAAATATAGGCTTCACACTAGAAGGCCCAGTCCAACCCTACAAACAGGAGCACCTGCACCACAGCTCGTAGTTCTAGGAGGAATTTGGGTCCCACCGGAATATGCCGCCGCCGCACACGCAGGCGCTCCAGCCCTCTATGGTCCACACCCTACTTCCCATGCGCCACCACCACACTACTGTGCGGCCACTCCCACGGTACCACAAGAATTCTACACTGCACAGCTTCCTCCACCACCACACCACCATGGCCTCCACCACCACCACCACGTGTACAAGGTGGCGCCACAGTCGCAAAGCTCTCCGGAGTCCGATGTTCCCGGAGGGGGCAACCGGTCGGAGAGCATCGAGGATGGGAAATCGGAGAGTAGTAGCTGGAAAGGCGAGAGTGGAGAGAATGAAGGAGAGAGAAAAGGATTGGCTGCACTTAGAGAAAAAGGGGAAGAGAGCACTGGGAGTGAGATCACTCTCAAATTCTAG 1377 0.4815 MASQGELSMDCKPYSYSMLLKSFADQTDQTYKLEEFLSRLEEERLKIDAFKRELPLCMQLLNNAMEASRQQLHAFRSSQGTRPVLEEFIPMKHPNSQENSEKVINISDKANWMTSAQLWSQASEGLSKSQSSAITSPKETEIGFSVSPKLALDNNKHRNGGGGAFLPFSKDRNSSSFQGLRALPELALASPEKEIQDKNCAEAETGGVSCSKRENSTKGVVVDQGKGAVTVTSEAQTTTTTTSNGQTHRKARRCWSPDLHRRFVNALQMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRLHTRRPSPTLQTGAPAPQLVVLGGIWVPPEYAAAAHAGAPALYGPHPTSHAPPPHYCAATPTVPQEFYTAQLPPPPHHHGLHHHHHVYKVAPQSQSSPESDVPGGGNRSESIEDGKSESSSWKGESGENEGERKGLAALREKGEESTGSEITLKF. 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g00852 458 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 247 307 IPR017930 -
Seca5g00852 458 MobiDBLite consensus disorder prediction 392 458 - -
Seca5g00852 458 SUPERFAMILY Homeodomain-like 247 308 IPR009057 -
Seca5g00852 458 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 20 426 IPR044787 GO:0003700|GO:0006355
Seca5g00852 458 MobiDBLite consensus disorder prediction 414 452 - -
Seca5g00852 458 Pfam Myb-like DNA-binding domain 252 303 IPR001005 -
Seca5g00852 458 MobiDBLite consensus disorder prediction 393 407 - -
Seca5g00852 458 Coils Coil 33 53 - -
Seca5g00852 458 FunFam Myb family transcription factor 249 307 - -
Seca5g00852 458 NCBIfam myb-like DNA-binding domain, SHAQKYF class 250 305 IPR006447 GO:0003677
Seca5g00852 458 Gene3D - 249 307 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g00852 Seca-Chr5 23105147 23108194 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g00852 1 458 G2-like Transcription Factor Family AT2G03500 50.313 4.38e-131 384
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Seca5g00852 Myb_DNA-binding 9.9e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g00852 - - gmx:100807925 625.55