Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g00849 ATGAAAGACCCAGAAGAGCATCAAGTGAAGTCTTGGAGGCCTCTCCAAAAATCTAGTAGAAGAAAGGGTAGAAGAAGAAGCCAAAGCAAGCAAGATAAATTACAAGAAAGTACAGGACTTGATTCACAAGTGCTGGTTCCTTCTGCTACTTGCAAGAGTCTTGTGTTTCCTCGCAGGCCTGGTTATGGCCAGCTTGGGACTAAGTGTCTCATCAAAGCTAACCACTTCCTTGCAGATATATCAGTATCTGACATGAGCCATTACAATGTTAAAATAACACCTGAAGTAATTTCTCGTAAGACAAACAAGGCTATCATATCAGAGCTTGTTAGGCTTCACAGGAACACTGACTTGGCCATGAGGCTCCCTGTGTATGATGGAGGAAGAAATCTTTACACTGCTGGTTTGCTTCCTTTTACATACAAAGAATTCAATGTAATGTTGAATGAGGATGATGATTTTACTGGTTGTATTTCGATTGTTTGTTGTAGGGAAAGAGAATTTAAGGTGGAAATCAAGTATGCAAATCGTGTTAGCATGCAACAACTTCGGGATCTTCTTAGTGGGAAACAAGTGGACACCCCACAAGAAGCGCTTAGTGTCTTTGATATTGTGTTAAGGGAGGTTGCAGCTCAGAGTTATGTATCAATTGGGAGGTTTCTGTATTCTCCTGATGTAAGAAAACCTCAGCAACTGGGTGGTGGGCTTGAATCATGGCGTGGATTCTACCAGAGTATAAGGCCTACTCAGATGGGATTGTCACTTAACATTGATATGTCATCAATGGCATTTATTGAACCACTACCTGTAATTGACTTTGTTGCTCAAATTCTTGGAAAAGATGTGCACTCAAAAACTTTGTCAGATTCAGATCGTGTCAAGATTAAAAAGGCCCTAAGAGGTGTAAAAGTAGAAGTCACACATAGAGGAAATTTTCGAAGGAAGTACAGAATATCAGGACTGACTTCACAGCCAACAAGGGAGCTTATTTTCCCTCTTGATGAGCAAATGAACATGAAATCAGTAGTTGATTATTTTCAAGAAATGTATGGATATACTATCAAATATCCTCATCTACCTTGCCTTCAAGTAGGAAGCCAAAGGAAGGTGAACTATTTGCCAATGGAGGCAAGCAAGATAGTTGGAGGCCAGAGATATACAAAAGGGCTAAATGAAAAGCAGATAACTTCTCTGCTAAAGGTCTCATGCCAGAGACCTCGTGAACAAGAGACAGACATTTTACAGACAATTCAACAAAACAATTATGAGAATAATCCCTATGCAAAGGAGTTTGGTATCAACATTGACAACAAACTTGCATCAGTTGAGGCTCGGGTTCTTCCTGCTCCATGGTTGAAATATCATGAAACTGGAAGAGAGAAAGAACACTTGCCACAAGTTGGTCAGTGGAATATGATGAACAAGAAAGTTATAAATGGAAGTACTGTAAGATATTGGGCATGTATCAATTTCTCACGAAGTGTACAAGAAAGTACAGCACGTGGATTTTGCCAACAGTTAGTTCAGATGTGTCAAATCTCAGGCATGGAATTCAGTGAGGACCCTGTGATTCCTGTATATTCAGCAAGACCGGATCAGGTAAAGAAGGCTTTGAAGTATGTACATTCTGCTGCTCTAGACAAACTTGATGGGAAAGAGTTAGAATTGCTGATTGCCATTCTTCCAGACAATAATGGTTCTCTGTATGGTATGTCACTACTACATTTGCATTACTTCATAATCATAGTAGATCTAGGATGTAACTGGGGTATAATTACAGAGAAGTTAAAAGGTGACCTGAAAAGAATCTGCGAAACAGATCTTGGGTTGATTTCTCAATGCTGCCTTACAAAGCATGTATTCAAGATTAATAGACAATACCTGGCAAATGTGGCACTAAAAATCAATGTCAAGATGGGAGGAAGAAACACAGTACTTTTGGATGCTTTAAGTTGGAGGATTCCACTAGTTAGTGATATCCCAACAATAATATTTGGAGCTGATGTAACTCATCCAGAATCTGGAGAGGATTCTTGCCCTTCCATTGCTGCTGTTGTAGCCTCCCAGGACTGGCCAGAAGTAACAAAGTATGCAGGGTTGGTTTGTGCCCAGCCACATCGTGAAGAACTCATCCAAGATCTTTTCAAATGTTGGAAAGATCCACAGCGGGGTGTAGTTTATGGTGGTATGATCAGGGATGGGGTAAGTGAGGGACAATTCTACCAGGTTTTGCTATATGAGCTTGATGCCATCCGTAAGGCCTGTGCATCTTTGGAACCTAGTTACCAACCTCCAGTAACATTTGTTGTGGTTCAAAAACGGCATCACACTAGACTCTTCTCAAACAATCACGATGACAAAAATAGCACTGATAAGAGTGGGAATATCTTACCTGGTACTGTGGTGGATTCTAAGATCTGTCATCCTACTGAATTCGATTTCTATTTATGCAGTCATGCCGGAATTCAGGGTACAAGTAGACCAGCACACTATCATGTCCTGTGGGACGAGAACAATTTCTCTGCAGATGAGATTCAGTCTCTAACCAACAACTTATGCTACACCTATGCAAGATGTACACGGTCTGTTTCCGTTGTGCCTCCAGCATACTATGCTCATCTGGCAGCCTACAGAGCTAGATTCTACATGGAACCTGATGTTTCTTCTGAGATTGCAAAACTTCGAGGTGCAAGATCAAAAGATAGGCATGTACGGCCACTGCCTGCTCTGAAAGAGAAGGTGAAGAATGTAATGTTTTACTGTTGA 2766 0.4085 MKDPEEHQVKSWRPLQKSSRRKGRRRSQSKQDKLQESTGLDSQVLVPSATCKSLVFPRRPGYGQLGTKCLIKANHFLADISVSDMSHYNVKITPEVISRKTNKAIISELVRLHRNTDLAMRLPVYDGGRNLYTAGLLPFTYKEFNVMLNEDDDFTGCISIVCCREREFKVEIKYANRVSMQQLRDLLSGKQVDTPQEALSVFDIVLREVAAQSYVSIGRFLYSPDVRKPQQLGGGLESWRGFYQSIRPTQMGLSLNIDMSSMAFIEPLPVIDFVAQILGKDVHSKTLSDSDRVKIKKALRGVKVEVTHRGNFRRKYRISGLTSQPTRELIFPLDEQMNMKSVVDYFQEMYGYTIKYPHLPCLQVGSQRKVNYLPMEASKIVGGQRYTKGLNEKQITSLLKVSCQRPREQETDILQTIQQNNYENNPYAKEFGINIDNKLASVEARVLPAPWLKYHETGREKEHLPQVGQWNMMNKKVINGSTVRYWACINFSRSVQESTARGFCQQLVQMCQISGMEFSEDPVIPVYSARPDQVKKALKYVHSAALDKLDGKELELLIAILPDNNGSLYGMSLLHLHYFIIIVDLGCNWGIITEKLKGDLKRICETDLGLISQCCLTKHVFKINRQYLANVALKINVKMGGRNTVLLDALSWRIPLVSDIPTIIFGADVTHPESGEDSCPSIAAVVASQDWPEVTKYAGLVCAQPHREELIQDLFKCWKDPQRGVVYGGMIRDGVSEGQFYQVLLYELDAIRKACASLEPSYQPPVTFVVVQKRHHTRLFSNNHDDKNSTDKSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFSADEIQSLTNNLCYTYARCTRSVSVVPPAYYAHLAAYRARFYMEPDVSSEIAKLRGARSKDRHVRPLPALKEKVKNVMFYC. 922
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g00849 921 Pfam Argonaute linker 1 domain 216 265 IPR014811 -
Seca5g00849 921 SUPERFAMILY PAZ domain 263 422 IPR036085 GO:0005515
Seca5g00849 921 Pfam Argonaute linker 2 domain 410 454 IPR032472 -
Seca5g00849 921 CDD Piwi_ago-like 426 883 IPR045246 -
Seca5g00849 921 Gene3D paz domain 262 386 - -
Seca5g00849 921 SMART DUF1785_2 215 267 IPR014811 -
Seca5g00849 921 MobiDBLite consensus disorder prediction 14 28 - -
Seca5g00849 921 Gene3D - 653 921 IPR036397 GO:0003676
Seca5g00849 921 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 52 885 - -
Seca5g00849 921 SMART PAZ_2_a_3 272 404 IPR003100 GO:0005515
Seca5g00849 921 Pfam PAZ domain 272 398 IPR003100 GO:0005515
Seca5g00849 921 CDD PAZ_argonaute_like 267 381 - -
Seca5g00849 921 FunFam Protein argonaute-2 261 387 - -
Seca5g00849 921 ProSiteProfiles Piwi domain profile. 580 884 IPR003165 GO:0003676
Seca5g00849 921 Gene3D - 446 647 - -
Seca5g00849 921 Pfam Mid domain of argonaute 465 542 IPR032473 -
Seca5g00849 921 SUPERFAMILY Ribonuclease H-like 546 885 IPR012337 -
Seca5g00849 921 SMART Piwi_a_2 587 884 IPR003165 GO:0003676
Seca5g00849 921 ProSiteProfiles PAZ domain profile. 268 382 IPR003100 GO:0005515
Seca5g00849 921 Pfam N-terminal domain of argonaute 68 206 IPR032474 -
Seca5g00849 921 Pfam Piwi domain 598 883 IPR003165 GO:0003676
Seca5g00849 921 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g00849 Seca-Chr5 22901886 22916507 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g00849 56 921 Eukaryotic Initiation Factors Gene Family AT5G43810 70.291 0.0 1318
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g00849 K11593 - gmx:100810235 1581.23