Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g00848 ATGGTGGAGATGGTTTCATCCGCCTCCGACGGTGGTTCCAAGACGAGGGACATCGACGGCCTTCTCGCCGGCGTCGGCTACAAAGTCCGTTCATCGGAGCTGAATCAAGTGGCTCAAAACATCGAACGGTTGGAGAACGCGATGGTGAACTCATCTGCTGACATTTCTGAACTCGCTTCGGAAACGGTTCACTACGATCCGTCTGATATAGGGACGTGGGTGGATACTCTTCTCTCTGGGCTCGACCACACCGTAACGTTACCCTGCGATCTCTCTGAGCTATCCAGTACTGCACTTCCGCCACAACAACACCAATTAATAACCACCGTGGAAGAAGACTCAGGGATAAGGCTCGTCCATATGTTGATGACGTGTGCAGATTCTCTGCAACGTGGCGATCTACCACTGGCTGGCTCGTTAATCGAGGCCATGCAGGGCTTGTTAGCACAGGTGAACACCAACTGCGGAATCGGAAAAGTCGCCGGTTACTTCATCGACGCTCTAAGCCGCCGTATCTTCGGCCAAAACACCGCAATCGTGAGTTCTCCTTACGAGAACGATGTTCTCTACCATCACTACTACGAGGCTTGTCCTTATCTCAAGTTCGCTCACTTCACAGCGAACCAAGCCATCCTTGAAGCCTTCAGCGGTCAAGATTGCGTCCACGTCATCGATTTCAACCTCATGCAGGGTCTTCAATGGCCGGCGCTAATTCAGGCTCTGGCTCTCCGTCCTGGAGGTCCGCCGTTGCTCCGCCTCACCGGCATTGGCCCTCCGTCACCGGACGACCGCGACACGCTCCGTGAAATCGGAGTTCGGCTCGCTGAGTTGGCTCGCTCCGTCAACGTCCGGTTCGCTTTCCGCGGCGTGGCGGCGGCGCGGCTGGAGGATGTGAAGCCGTGGATGCTTCAGGTGAGCCCGAAGGAAGCTGTGGCCGTGAATTCCATCATGCAGCTTCACCGTCTCCTCGGTTCTAAATCCGGCTCGAACAAATCAGGAATCGAAGCGGTACTTGGCTGGATCCGGGGTTTGAATCCTAAGATCGTGACGGTTGTGGAGCAGGAAGCGAACCATAACGAGGAACGGTTCATGGAGCGGTTCACGGAGGCGCTGCATTATTACTCGACCGTTTTTGACTCGCTTGAAGCGTGTCCGATCGAACCGGAAAAGGCACTGGCGGAGATGTACTTGCAAAGGGAGATATGTAACGTGGTGTGCTGTGAGGGAACGGCTCGGGTGGAGAGGCATGAACCGCTGGCTAAGTGGAGGGATCGGCTCGGGAAAGCCGGGTTCAGACCGCTGCATTTGGGTTCAAATGCGTTCAAGCAAGCCAGCATGCTTTTGACACTGTTTTCAGCTGAGGGTTACTGTGTGGAAGAGAATCAAGGATGCTTGACTCTTGGTTGGCATAGCCGTCCTCTCATTGCAGCTTCGGCTTGGCAAGCCGTGCCTGTGCGAGAGAGGGAAACGCTGCGTTTCGAGCACTGA 1488 0.5524 MVEMVSSASDGGSKTRDIDGLLAGVGYKVRSSELNQVAQNIERLENAMVNSSADISELASETVHYDPSDIGTWVDTLLSGLDHTVTLPCDLSELSSTALPPQQHQLITTVEEDSGIRLVHMLMTCADSLQRGDLPLAGSLIEAMQGLLAQVNTNCGIGKVAGYFIDALSRRIFGQNTAIVSSPYENDVLYHHYYEACPYLKFAHFTANQAILEAFSGQDCVHVIDFNLMQGLQWPALIQALALRPGGPPLLRLTGIGPPSPDDRDTLREIGVRLAELARSVNVRFAFRGVAAARLEDVKPWMLQVSPKEAVAVNSIMQLHRLLGSKSGSNKSGIEAVLGWIRGLNPKIVTVVEQEANHNEERFMERFTEALHYYSTVFDSLEACPIEPEKALAEMYLQREICNVVCCEGTARVERHEPLAKWRDRLGKAGFRPLHLGSNAFKQASMLLTLFSAEGYCVEENQGCLTLGWHSRPLIAASAWQAVPVRERETLRFEH. 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g00848 495 Pfam GRAS domain family 118 481 IPR005202 -
Seca5g00848 495 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 98 477 IPR005202 -
Seca5g00848 495 SMART DELLA_2 19 91 - -
Seca5g00848 495 Gene3D - 17 81 IPR038088 -
Seca5g00848 495 Coils Coil 27 61 - -
Seca5g00848 495 ProSiteProfiles GRAS family profile. 109 481 IPR005202 -
Seca5g00848 495 Pfam Transcriptional regulator DELLA protein N terminal 19 84 IPR021914 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g00848 Seca-Chr5 22867907 22869394 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g00848 4 481 GRAS Transcription Factor Family AT1G14920 47.909 3.76e-165 476
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Seca5g00848 GRAS 5.3e-127 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g00848 K14494 - gmx:100805968 748.429