Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g00839 ATGGAAAAGAAAAAGGTGGCGGTGCCTCTTGTGTGTCACGGTCACTCTCGCCCAGTGGTCGATCTCTTCTATAGTCCCATTACTCCCGATGGGTTCTTCCTTATCAGCGCAAGCAAGGATGCCAGTCCTATGCTCAGGAATGGTGAGACTGGAGACTGGATTGGAACCTTTGAAGGGCACAAGGGTGCTGTGTGGAGTTGCTGCTTGGATGCTAATGCTTTGCGAGCTGCAACTGCTTCTGCTGATTTCTCAAGCAAAGTTTGGGATGCATTAACTGGCGATGAGTTGCATTCTTTTGAACATAAGCACATTGTTAGAGCATGTGCTTTTTCTGAGGATACACACCTTTTGCTCACTGGGGGGGCAGAGAAAATTCTCCGAATTTATGATTTGAATCGGCCTGATGCAGCACCCAGAGAAGTGGATAAATCCCCTGGTTCAGTCAGAACTGTTGCATGGCTTCATAGTGATCAGACAATATTGAGTTCTTGTACTGATATGGGAGGTGTCAGGTTATGGGATGTAAGAAGTGGTAAAATAGTCCAGACACTCGATACCAAGTCATCTATGACAAGTGCTGAAGTGAGTCAGGATGGTCGTTATATTACAACTGCTGATGGTTCTACCGTAAAGTTTTGGGATGCAAATCACTATGGATTGGTGAAGAGCTATGATATGCCCTGCACTGTGGAATCAGCATCACTGGAGCCCAAGTATGGGAACAAATTCATTGCTGGGGGAGAAGACATGTGGGTTCATGTTTTTGATTTCCATACTGGCAATGAGATTGGTAAGTTGCTGCATGCAACAAGGGCCATCATGGTCCTGTACACTGTGTCCGTTTCTCTCCTGGAGGAGAATCATATGCCTCAGGATCTGAGGATGGAACCATCAGAATATGGCAGACAGGTCCATTGA 918 0.4619 MEKKKVAVPLVCHGHSRPVVDLFYSPITPDGFFLISASKDASPMLRNGETGDWIGTFEGHKGAVWSCCLDANALRAATASADFSSKVWDALTGDELHSFEHKHIVRACAFSEDTHLLLTGGAEKILRIYDLNRPDAAPREVDKSPGSVRTVAWLHSDQTILSSCTDMGGVRLWDVRSGKIVQTLDTKSSMTSAEVSQDGRYITTADGSTVKFWDANHYGLVKSYDMPCTVESASLEPKYGNKFIAGGEDMWVHVFDFHTGNEIGKLLHATRAIMVLYTVSVSLLEENHMPQDLRMEPSEYGRQVH. 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g00839 305 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT I 7 265 - -
Seca5g00839 305 Pfam WD domain, G-beta repeat 94 130 IPR001680 GO:0005515
Seca5g00839 305 Pfam WD domain, G-beta repeat 54 89 IPR001680 GO:0005515
Seca5g00839 305 SUPERFAMILY WD40 repeat-like 6 274 IPR036322 GO:0005515
Seca5g00839 305 ProSiteProfiles Trp-Asp (WD) repeats profile. 98 139 IPR001680 GO:0005515
Seca5g00839 305 Gene3D - 9 282 IPR015943 GO:0005515
Seca5g00839 305 ProSiteProfiles Trp-Asp (WD) repeats profile. 57 98 IPR001680 GO:0005515
Seca5g00839 305 SMART WD40_4 92 130 IPR001680 GO:0005515
Seca5g00839 305 SMART WD40_4 5 47 IPR001680 GO:0005515
Seca5g00839 305 SMART WD40_4 217 256 IPR001680 GO:0005515
Seca5g00839 305 SMART WD40_4 50 89 IPR001680 GO:0005515
Seca5g00839 305 SMART WD40_4 177 214 IPR001680 GO:0005515
Seca5g00839 305 SMART WD40_4 134 174 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g00839 Seca-Chr5 22689473 22699990 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g00839 9 249 Eukaryotic Initiation Factors Gene Family AT2G46290 28.571 7.05e-30 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g00839 K13137 - gmx:100782712 527.709