Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g00835 ATGGCACAGAACATTGAGGTGCCACCTCCACAACCTCAAGATCATGAAAAAACCAACAACCAGAAAGTTCCCTTCTACAAGCTTTTCACTTTTGCTGATCGCCTTGATGTTACGCTGATGATCATTGGCACCATCTGTGCCATGGCGAATGGCTTATCGCAACCTCTCATGACCATCATTCTTGGGAAGCTCATCAACGTCTTTGGCTCCAACGTTCCATCCCAAGTTGTTAATGAAGTTTCTAAGGTTGCACTATTATTTGTTTACTTGGGTGTTGGGTCTGGAATAGCATCATTTCTACAGGTATCATGTTGGATGGTGACAGGAGAAAGACAAGCCACACGCATCCGTGGCTTGTACTTGAAAACTATATTAAAACAAGACATTGCCTTCTTTGACACTGAAACAACAACTGGAGAGGTAATTGGGAGAATGTCTGGTGATACCATTCTCATTCAAGATTCCATGGGAGAAAAGGTTGGGAAGTTTATTCAACTTGCTTCAACTTTTTTTGGTGGCTTTGTGATTGCCTTTGTAAGAGGATGGCAACTCGCTCTAGTTTTGCTTTCATGTATACCATTGGTTATCATTGCTGGTGGATTCATGTCTGTGTTGATGTCTAGAATGTCAAGTCGTGGGCAAGCTGCTTATGCAGAAGCAGGAAATGTTGTTGAACAAATAGTGGGAGCCATTAGAACAGTTGCATCTTTTACTGGTGAGAAAAAAGCAAAAGAGAGGTATAATAACAAGTTAAAAGTTGCTTACACTACAATGGTTCAACAAGGAATGGTCTCAGGGCTAGGAATGGGAGTGCTTCTGTTGATTATCTTTTGCACCTATGGACTTGCAATGTGGTATGGTTCCAAACTGGTCATTGAAAAAGGATACATTGGTGGAACAGTCATAACTGTAATCGTAGCTCTTATGACTGGAGGAATGTCACTGGGTCAAGCATCCCCATGTGTAAATGCATTTGCTACAGGTCAAGCAGCAGCATATAAGATGTTTGAGACAATTAAAAGAAAGCCCAAAATTGATGCTTATGACACCAGTGGTGTTATCTTGGAAGACATAAAGGGAGATATTGAGCTCAAAGATGTTTATTTCACATACCCTGCAAGGCCAGATGTGCAGATCTTCACTGGATTCTCATTATTTGTTCCAAATGGCACAACTACTGCTTTAGTGGGTCAAAGTGGAAGTGGGAAGTCTACAGTGATCAGTTTATTAGAAAGATTCTATGATCCTGATGCTGGAGAAGTACTTATTGATGGAGTGAATTTGAAGAGTTTGCAAGTTAGATGGATAAGAGAACAGATTGGGTTGGTTAGTCAAGAACCTATCCTATTTACAACTAGTATCAAAGAGAACATAGCTTATGCGAAAGAAGGTGCAACTGATGAGGAGATAGCAACAGCAATAACACTTGCCAATGCCAAAAAGTTCATTGACAAGCTGCCTCAGGGCCTTGACACAATGGCAGGGCAGAATGGGACTCAACTTTCTGGTGGGCAAAAGCAAAGAATTGCAATTGCAAGGGCAATTTTGAAGAACCCTAAAATCCTCCTTCTTGATGAAGCAACTAGTGCTTTGGATGCTGAGTCTGAACGTATTGTTCAAGAAGCATTGGAAAGAGTTATGTCAAAAAGGACTACTGTAGTTGTTGCACATCGTTTAACAACTATTAGAAATGCTGATATCATAACAGTGGTTCATCAAGGCAAAATTGTGGAGAAAGGTATTCACTTTTGCATGCTTCCTTTATATGTAGGAACTCATGATGAGTTAATCAAGGATGCTGATGGTGCTTATTCTCAACTTATTCGTCTACAAGAAGGAGAAAAAGAAGGTGAAGGTAGCCGGGAGAATGAAGCACATAAGTCAAGTAAGAGCTTAATTTTAGATAGTCACATGGCTAGATCAATAAGCAGAGGTTCATCAGGGAGTCGACACTCTCAGTCCTTTAGCTTTGCTCTTCCTTATCAAAGTGGTGGACAAACAGAAGAAGTGGATGTTGAACAAAGTCATGTTGATAATAAGAAGCCCAAAAGGTTTTCTATAAGACGTTTGGCATACCTGAATAAGCCTGAGGTTCCTGTCTTACTACTTGGATCCATTGCTGCAACAATAAATGGTGTCGTGTTCCCTACATTTGGCCTCTTGTTTTCATCAGCCATTGTTATGTTCTTTAAACCTCCAGAACAACAGCAGAAAGATGCTAGGTTCTGGACACTTCTTTATGTGGGTTTAGGTTTAGTTACTCTAGTGGTTTTACCACTCCAAAATTATTTCTTTGGGATTGCTGGTGGAAAACTAATAGAGAGAATTCGTTCCTTAACATTTGAGAAGGTTGTGCATCAAGAAATCAGTTGGTTTGATGACCCTTCAAATTCGAGTGGTGCAGTTGGTGCAAGGTTATCTACTGATGCTTCAACAGTGAAAAGTCTTGTTGGTGACACCTTGGCCCTCATGGTGCAAAACATATCAACAATCACAACAGGTCTAGTTATAGCATTCACTGCTAATTGGATTCTCGCTTTAATAATTCTGGCTGTGTCACCTTTGGTCATTATGCAAGGATGCATTCAAATGAGGTTTCTTAAAGGATTCAGTGCTGATGCCAAGGTTAAGTATGAAGAGGCAAGTCAGGTGGCAACTGATGCTGTTGGTAACATTAGAACTGTTGCATCATTTTGTGCAGAATCGAAGGTGATGGATATGTACAAGAAGAAATGTTCAGGGCCAGAAAAACAAGGTGTTCAGTTGGGGCTTGTTAGTGGTGCAGGATTAGGTTTCTCTTTTTTGGCTCTATATTGCACAAATGCTTTTTGTTTCTACATAGGATCTGTTCTTGTGCGACACGGCCTTGCAACTTTTTCAGAGGTTTTCAGGGTTTTCTTTTGCATAACAATTACAGCAATTGGTGTTTCCCAGACAAATGCCTTGGCACCAGACACTAACAAGGCCAGAGATTCCGCAGCTTCAATATTTGAAATTCTTGATAGCAAACCTATCATTGACTCAAGCAGCAATGAAGGTAGAACACTAGAATCAGTTAATGGCAATATTGAACTTCAACATGTCAACTTTAATTACCCAACAAGGCCTCATATTCAAATTCTCAAAGATTTGAGCTTAAGAATCCCATCTGGAAAGACTATTGCCTTGGTTGGAGAAAGTGGTTGTGGAAAATCAACAATCATCAGCCTTTTGGAGAGGTTTTATAACCCTAGCTCCGGGCATATACTACTAGATGGTGTGGATATTAGAGAGTTCAGACTAAGTTGGTTGAGGCAACAAATGGGTTTAGTTGGTCAAGAGCCCATTCTTTTCAATGAAAGCATTCGTGCAAACATAGCTTATGGCAAAGAGGGAGGTTCTACAGAGGATGAGATAATTGCAGCAGCTCAAGCAGCCAATGCACACAGGTTCATAAGTTCTCTTCCAAATGGTTATGACACCTCTGTTGGAGAAAGAGGCACACAACTATCAGGAGGGCAAAAGCAACGTATTGCCATTGCAAGAGCCATGCTCAAAGACCCCAAAGTCCTTTTACTTGATGAGGCAACTAGTGCACTTGATGCTGAGTCAGAGCGTGTAGTTCAAGAGGCTCTAGACAGAGTCAGTGTGGATAGAACTACTATTGTGGTAGCTCACCGTCTTACAACAATTAGAGGGGCTGACATTATAGCAGTAATTAAAAATGGGATGGTTGCTGAAAAGGGAAAGCATGATGTCTTGATCAAGATTACTGATGGGGCTTATAATTCATTGGTCGCTTTATATTCCGGTGCAGCATAA 3801 0.4075 MAQNIEVPPPQPQDHEKTNNQKVPFYKLFTFADRLDVTLMIIGTICAMANGLSQPLMTIILGKLINVFGSNVPSQVVNEVSKVALLFVYLGVGSGIASFLQVSCWMVTGERQATRIRGLYLKTILKQDIAFFDTETTTGEVIGRMSGDTILIQDSMGEKVGKFIQLASTFFGGFVIAFVRGWQLALVLLSCIPLVIIAGGFMSVLMSRMSSRGQAAYAEAGNVVEQIVGAIRTVASFTGEKKAKERYNNKLKVAYTTMVQQGMVSGLGMGVLLLIIFCTYGLAMWYGSKLVIEKGYIGGTVITVIVALMTGGMSLGQASPCVNAFATGQAAAYKMFETIKRKPKIDAYDTSGVILEDIKGDIELKDVYFTYPARPDVQIFTGFSLFVPNGTTTALVGQSGSGKSTVISLLERFYDPDAGEVLIDGVNLKSLQVRWIREQIGLVSQEPILFTTSIKENIAYAKEGATDEEIATAITLANAKKFIDKLPQGLDTMAGQNGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQEALERVMSKRTTVVVAHRLTTIRNADIITVVHQGKIVEKGIHFCMLPLYVGTHDELIKDADGAYSQLIRLQEGEKEGEGSRENEAHKSSKSLILDSHMARSISRGSSGSRHSQSFSFALPYQSGGQTEEVDVEQSHVDNKKPKRFSIRRLAYLNKPEVPVLLLGSIAATINGVVFPTFGLLFSSAIVMFFKPPEQQQKDARFWTLLYVGLGLVTLVVLPLQNYFFGIAGGKLIERIRSLTFEKVVHQEISWFDDPSNSSGAVGARLSTDASTVKSLVGDTLALMVQNISTITTGLVIAFTANWILALIILAVSPLVIMQGCIQMRFLKGFSADAKVKYEEASQVATDAVGNIRTVASFCAESKVMDMYKKKCSGPEKQGVQLGLVSGAGLGFSFLALYCTNAFCFYIGSVLVRHGLATFSEVFRVFFCITITAIGVSQTNALAPDTNKARDSAASIFEILDSKPIIDSSSNEGRTLESVNGNIELQHVNFNYPTRPHIQILKDLSLRIPSGKTIALVGESGCGKSTIISLLERFYNPSSGHILLDGVDIREFRLSWLRQQMGLVGQEPILFNESIRANIAYGKEGGSTEDEIIAAAQAANAHRFISSLPNGYDTSVGERGTQLSGGQKQRIAIARAMLKDPKVLLLDEATSALDAESERVVQEALDRVSVDRTTIVVAHRLTTIRGADIIAVIKNGMVAEKGKHDVLIKITDGAYNSLVALYSGAA. 1267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g00835 1266 FunFam ABC transporter B family member 1 681 989 - -
Seca5g00835 1266 Pfam ABC transporter 1041 1191 IPR003439 GO:0005524
Seca5g00835 1266 Gene3D ABC transporter type 1, transmembrane domain 13 341 IPR036640 GO:0005524|GO:0016020
Seca5g00835 1266 Pfam ABC transporter 383 529 IPR003439 GO:0005524
Seca5g00835 1266 SMART AAA_5 389 575 IPR003593 GO:0016887
Seca5g00835 1266 SMART AAA_5 1050 1243 IPR003593 GO:0016887
Seca5g00835 1266 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 41 327 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca5g00835 1266 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1023 1260 IPR003439 GO:0005524
Seca5g00835 1266 FunFam ABC transporter B family member 1 352 612 - -
Seca5g00835 1266 SUPERFAMILY ABC transporter transmembrane region 682 1004 IPR036640 GO:0005524|GO:0016020
Seca5g00835 1266 CDD ABC_6TM_Pgp_ABCB1_D2_like 691 1006 - -
Seca5g00835 1266 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 362 598 IPR003439 GO:0005524
Seca5g00835 1266 ProSitePatterns ABC transporters family signature. 501 515 IPR017871 GO:0005524|GO:0016887
Seca5g00835 1266 ProSitePatterns ABC transporters family signature. 1163 1177 IPR017871 GO:0005524|GO:0016887
Seca5g00835 1266 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 702 988 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca5g00835 1266 CDD ABC_MTABC3_MDL1_MDL2 1023 1259 - -
Seca5g00835 1266 SUPERFAMILY ABC transporter transmembrane region 27 346 IPR036640 GO:0005524|GO:0016020
Seca5g00835 1266 CDD ABC_6TM_Pgp_ABCB1_D1_like 40 335 - -
Seca5g00835 1266 FunFam ABC transporter B family member 9 27 357 - -
Seca5g00835 1266 Gene3D - 1013 1260 IPR027417 -
Seca5g00835 1266 PANTHER ABC TRANSPORTER B FAMILY 13 612 IPR039421 -
Seca5g00835 1266 FunFam ABC transporter B family member 1 1013 1263 - -
Seca5g00835 1266 CDD ABC_MTABC3_MDL1_MDL2 362 611 - -
Seca5g00835 1266 Gene3D ABC transporter type 1, transmembrane domain 681 989 IPR036640 GO:0005524|GO:0016020
Seca5g00835 1266 Gene3D ABC transporter type 1, transmembrane domain 990 1012 IPR036640 GO:0005524|GO:0016020
Seca5g00835 1266 Pfam ABC transporter transmembrane region 702 973 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca5g00835 1266 Pfam ABC transporter transmembrane region 40 311 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca5g00835 1266 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 352 611 IPR027417 -
Seca5g00835 1266 Gene3D - 353 622 IPR027417 -
Seca5g00835 1266 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1013 1260 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g00835 Seca-Chr5 21971192 21977554 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g00835 8 1261 Calmodulin-binding Proteins AT2G36910 45.161 0.0 1077
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g00835 K05658 - gmx:100801771 1955.26