Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g00830 ATGGCCGCTGCTGCAGCAACAACAATGGAGCAAGTCCAATGCTTTGGAAGGAAGAAGAACGCAGTTGCAGTTACTTACTGCAAGAGAGGTCGTGGTCTCATCAAGATCAATGGCTGTCCAATCGAGCTTGTGCAGCCTGAGATTCTCCGCTTCAAGGCCTTTGAGCCCATCCTCCTCCTCGGCAGGCATCGCTTCGCCGGCGTCGACATGCGCATCCGTGTCAAGGGCGGTGGTCACACCTCACAGATCTACGCCATCCGTCAGAGCATCGCCAAGGCTCTCGTTGCCTACTACCAGAAGTATGTCGACGAACAGAGCAAGAAGGAGATCAAGGACATCCTTGTCCGCTATGACCGCACCCTCCTCGTTGCTGATCCCAGGCGCTGCGAGCCCAAGAAGTTCGGTGGTCGCGGCGCTCGTGCTAGGTTCCAGAAGTCCTACCGTTGA 447 0.5638 MAAAAATTMEQVQCFGRKKNAVAVTYCKRGRGLIKINGCPIELVQPEILRFKAFEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR. 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g00830 148 ProSitePatterns Ribosomal protein S9 signature. 76 94 IPR020574 GO:0003735|GO:0005840|GO:0006412
Seca5g00830 148 FunFam 40S ribosomal protein S16 4 148 - -
Seca5g00830 148 Gene3D - 2 148 IPR014721 -
Seca5g00830 148 SUPERFAMILY Ribosomal protein S5 domain 2-like 11 148 IPR020568 -
Seca5g00830 148 Pfam Ribosomal protein S9/S16 16 148 IPR000754 GO:0003735|GO:0005840|GO:0006412
Seca5g00830 148 PANTHER RIBOSOMAL PROTEIN S9 7 145 IPR000754 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g00830 Seca-Chr5 21803701 21804147 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g00830 1 148 Cytoplasmic Ribosomal Protein Gene Family AT2G09990 87.838 4.10e-94 266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g00830 K02960 - gmx:100816874 283.493