Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g00823 ATGTTAATCCTATCTGTTTTTCAAAAACGGTATCCTCCTCCTCGGTTCTGCTCTTCTGATCCTACTGATCGTTCTTTCCAGTTCAGTGCCACCTCGTACTTGCTCACGGCGGTTCGGGACGAACCTGTTAATACCAAAAAGGCTAAGATGTTTCAATGCATAAGTTGTTCGAAGCAGGCAAACGCAGAGGATGAAGAAGGTCGTGGGAGTGGCACGCCCAAGAGAAAGGAAGGCATCAAAAGCCTGACTTCGCAGATAAAGGATCTTGTGCTAAAGATTTCAGGTGCTAAGTCCAAAGCAAACACAGGCTCAACTTCAGACAGGGGAAAGAAACCCCTTGCTGATTATGAGATCCTGTCTGAAGGGGTTCAATACCCTTATATGGGAGGTGACATGACCCCAGGAAGGATTGAACCAGTAGCAGCCGCCCAAGATGGGTTGGGGGAAGAGGATGAAGCTATAGAATGGGTGGTTCAGGTGGAGCCAGGAGTCCAAATCACATTTGAGACCATTCCTACTGGGGGACATGTTCTCAAGAGAATTTGCTTCAACCGAGAGATGTTTGACAGGCACCAAGCTCAAGCATGGTGGGGTGACAATTATGATAGGATCATGGAACTTTACAATGTCCAGAGTTTCAACCAAAATGCTATCAGCACTTCTCAGAGGTTTGAGGATGAGCAAAGGGGTAGTAGCTCAGGAATCACTTTGGACAACATTGGTGGTGGTGAAAACTTGAATGAAGGAGGACCATCCAATGAAGTTGCACGAATATCCAACTCTTCTATACAGGAGACTGAATTCAATAATGGCATTGGCAATGACTCGGAATGGATTCAGCAAGATCAACCTGGAGTGTTTATCACAATCAGGGTGTTTCCTGATGGAACAGTATCATGCCCATACATATGGTGGAGTATTTATGCAGTGGCCATCAATGCAGTATTTATGCAGACATATGTTGGTGGAGTATCATGCCCATACATATGTTCAAGGCGGCTGGATCATGGGGTCTTATTGGTGGGATATGGTTCTGATGGCTATGCACCCATTCGGATGAAGGAGAAGCCATATTGGATCATTAAAAATTCCTGGGGAGAGAGCTGGGGAGAAAATGGATACTACAAGATTTGCAGTGGACGAAGTATCTGTGGGGTGGATTCCATGGTTTCTACTGTCGCCGCTATTCATACCGATACCACCACTCAGTAG 1212 0.4587 MLILSVFQKRYPPPRFCSSDPTDRSFQFSATSYLLTAVRDEPVNTKKAKMFQCISCSKQANAEDEEGRGSGTPKRKEGIKSLTSQIKDLVLKISGAKSKANTGSTSDRGKKPLADYEILSEGVQYPYMGGDMTPGRIEPVAAAQDGLGEEDEAIEWVVQVEPGVQITFETIPTGGHVLKRICFNREMFDRHQAQAWWGDNYDRIMELYNVQSFNQNAISTSQRFEDEQRGSSSGITLDNIGGGENLNEGGPSNEVARISNSSIQETEFNNGIGNDSEWIQQDQPGVFITIRVFPDGTVSCPYIWWSIYAVAINAVFMQTYVGGVSCPYICSRRLDHGVLLVGYGSDGYAPIRMKEKPYWIIKNSWGESWGENGYYKICSGRSICGVDSMVSTVAAIHTDTTTQ. 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g00823 403 ProSiteProfiles BRX domain profile. 154 209 IPR013591 -
Seca5g00823 403 PANTHER PROTEIN BREVIS RADIX-LIKE 1 50 297 IPR044532 -
Seca5g00823 403 SUPERFAMILY Cysteine proteinases 309 394 IPR038765 -
Seca5g00823 403 Gene3D Cysteine proteinases 305 397 - -
Seca5g00823 403 Pfam Transcription factor BRX N-terminal domain 71 100 IPR027988 -
Seca5g00823 403 MobiDBLite consensus disorder prediction 221 252 - -
Seca5g00823 403 Pfam Transcription factor regulating root and shoot growth via Pin3 155 208 IPR013591 -
Seca5g00823 403 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 334 344 IPR025660 -
Seca5g00823 403 MobiDBLite consensus disorder prediction 221 240 - -
Seca5g00823 403 Pfam Papain family cysteine protease 309 392 IPR000668 GO:0006508|GO:0008234
Seca5g00823 403 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 358 377 IPR025661 -
Seca5g00823 403 SMART pept_c1 72 394 IPR000668 GO:0006508|GO:0008234
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g00823 Seca-Chr5 21211858 21215396 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g00823 46 297 Major Intrinsic Protein MIP AT1G31880 40.764 8.02e-63 204
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g00823 - - ccaj:109789470 223.402