Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g00820 ATGGGAGAGGTAGCGCGTGGAGGTTGTTGCCCTCCGATGGATCTGTTCCGTTCGGAGCCGATGCAACTTGTTCAGCTCATCATCCCCATCGAATCCGCTCATCGCACTGTCTCCTACCTTGGCGACCTTGGCCTCCTTCAGTTTAAAGATCTCAATGCAGACAAGAGCCCTTTTCAACGGACTTATGCAACTCAGATAAAAAGATGTGGAGAGATGGCACGTAAATTGCGTTTTTTCAAGGAGCAAATGTTGAAGGCTGGTGTTTCCCCAAAACATTCCACAACACAGGTTGATGTGAACATTGATGACCTTGAGGTAAAACTTACAGAAATCGAGTCAGAGTTAACTGAGATGAATGCAAATGGTGAAAAATTGCAACGCTCATACAATGAACTTGTGGAGTATAAGCTTGTTCTGCAGAAGGCTGGTGACTTTTTCCACTCAGCTCAAAGCCGTGCCATAGAACAGCAGAGAGAATATGAATCACGCCATTTGAGTGATGAATCTATGGAAACACCTCTGTTACAGGACCAAGAATTGTTAGGTGATTCATCGAAGCCAGTTAAGTTGGGGTTTCTAGCAGGTCTTGTTCCCAGGGAAAAGTCCATGGCATTTGAGAGAATTTTATTTCGTGCTACTAGAGGCAATGTGTTTTTGAGGCAGGCTGCTGTTGAGGATCCTGTCACAGACCCTGTTTCTGGAGAAAAGACTGAGAAAAATGTGTTTGTGGTCTTCTATGCCGGCGAAAGAGCAAAAGCCAAGATTCTGAAAATCTGTGAAGCCTTTGGTGCTAATCGATACCCTTTTGCTGAGGATCTTGGAAAACAAGCTCAAATGATTACAGAGGTTTCTGGAAGACTATTAGAATTGAAGACCACCATAGATGCTGGACTCCTGCACCGGGTTAACTTGCTAGAAACTATTGGGGCTCAATTTGAGCAATGGAATCTTTTGGTGAGGAAGGAGAAATCCATTCACCATACCCTGAACATGCTAAGCCTTGATGTGACAAAAAAATGTCTTGTGGCTGAGGGGTGGAGTCCTGTTTTTGCAACAAAGCAGATCCAGGATGCATTACAGCGGGCAGCAATTGACTCTAATTCTCAAGTCAATGCAATTTTCCAAGTTTTGCATACTAGGGAGTTGCCACCTACCTATTTTCGCACAAACAAATTTACTTCTTCATTTCAAGGAATTATTGACTCATATGGGGTTGCTAAGTATCAGGAGGCAAATCCTACTGTGTATTCTGTAGTAACATTTCCATTTCTTTTTGCTGTGATGTTTGGTGATTGGGGGCATGGAATATGTTTACTACTGGCAGCTCTGTATTTCATAATCAGGGAGAAGAAACTTTCTAGTCAGAAGCTTGATGACATCACGGATATGACTTTTGGAGGTCGTTATGTTATTCTGTTGATGTCACTATTCTCAATCTACACTGGTGTGATCTATAATGAGTTCTTTTCTGTCCCATTTGAACTCTTTGGTCCCTCTGCGTATGCATGTCGTGACCTTTCTTGCAGTGAAGCTACAACAGTGGGTCTGATAAAAGTGCGTCGCACTTACCCTTTTGGAGTGGATCCTGTATGGCATGGTACACGTAGTGAATTACCATTCCTTAACTCACTGAAAATGAAAATGTCAATACTTCTTGGAGTTGCTCAAATGAACCTTGGAATTATAATGAGCTATTGCAATGCCAAATTTTTTAGGAACTCCGTAAATACATGGTTCCAATTTATTCCCCAGATGATATTTCTCAACAGTCTATTTGGCTACCTATCCCTTCTTATTATTGTGAAGTGGTGCACTGGTTCTCAAGCTGATTTGTACCATATAATGATCTACATGTTCCTGAGCCCAACAGATGATTTGGGTGAAAACCAACTCTTTGTTGGTCAGAAAAATCTGCAGCTTGTGCTTTTGCTTCTGGCTGTTGTAGCTGTTCCCTGGATGCTGTTGCCAAAACCTTTTATTTTGAAGAAGCAACATCAAGATAGGCACGGAGCTGGATCCTATACACCACTTCCAAGCACAGAGGAGAGCTTGCAAGTAGAGTCAAATCATGATTCCCATGGTCATGAGGAATTTGAGTTCAGTGAAGTTTTTGTGCACCAACTCATCCACACCATAGAATTTGTACTTGGAGCAGTATCTAATACAGCTTCTTACCTTCGTCTGTGGGCTCTTAGTCTTGCTCATTCAGAGTTATCAAGTGTATTCTACGAGAAGGTTCTTGTTATGGCATGGGGGTACAATAACGTGATTATCCTGATAGTAGGTATCATTGTCTTCATTTTCGCTACCGTTGGAGTCTTACTTGTCATGGAAACTCTGAGTGCTTTCTTGCATGCGTTGCGACTTCACTGGGTGGAGTTCCAAAACAAGTTTTATGAGGGCGATGGTTACAAGTTCTATCCTTTCTCGTTCTCATTGCTAGATGAAGAGGATGAAATGCTTTAA 2466 0.4221 MGEVARGGCCPPMDLFRSEPMQLVQLIIPIESAHRTVSYLGDLGLLQFKDLNADKSPFQRTYATQIKRCGEMARKLRFFKEQMLKAGVSPKHSTTQVDVNIDDLEVKLTEIESELTEMNANGEKLQRSYNELVEYKLVLQKAGDFFHSAQSRAIEQQREYESRHLSDESMETPLLQDQELLGDSSKPVKLGFLAGLVPREKSMAFERILFRATRGNVFLRQAAVEDPVTDPVSGEKTEKNVFVVFYAGERAKAKILKICEAFGANRYPFAEDLGKQAQMITEVSGRLLELKTTIDAGLLHRVNLLETIGAQFEQWNLLVRKEKSIHHTLNMLSLDVTKKCLVAEGWSPVFATKQIQDALQRAAIDSNSQVNAIFQVLHTRELPPTYFRTNKFTSSFQGIIDSYGVAKYQEANPTVYSVVTFPFLFAVMFGDWGHGICLLLAALYFIIREKKLSSQKLDDITDMTFGGRYVILLMSLFSIYTGVIYNEFFSVPFELFGPSAYACRDLSCSEATTVGLIKVRRTYPFGVDPVWHGTRSELPFLNSLKMKMSILLGVAQMNLGIIMSYCNAKFFRNSVNTWFQFIPQMIFLNSLFGYLSLLIIVKWCTGSQADLYHIMIYMFLSPTDDLGENQLFVGQKNLQLVLLLLAVVAVPWMLLPKPFILKKQHQDRHGAGSYTPLPSTEESLQVESNHDSHGHEEFEFSEVFVHQLIHTIEFVLGAVSNTASYLRLWALSLAHSELSSVFYEKVLVMAWGYNNVIILIVGIIVFIFATVGVLLVMETLSAFLHALRLHWVEFQNKFYEGDGYKFYPFSFSLLDEEDEML. 822
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g00820 821 PIRSF ATP6V0A1 11 820 IPR026028 GO:0000220|GO:0046961
Seca5g00820 821 Coils Coil 101 128 - -
Seca5g00820 821 Pfam V-type ATPase 116kDa subunit family 39 811 IPR002490 GO:0033179|GO:0046961|GO:1902600
Seca5g00820 821 PANTHER VACUOLAR PROTON ATPASES 15 818 IPR002490 GO:0033179|GO:0046961|GO:1902600
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g00820 Seca-Chr5 21177047 21188020 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g00820 13 819 Primary Pumps ATPases(2) AT4G39080 78.616 0.0 1317
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g00820 K02154 - gmx:100810062 1473.37