Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Seca5g00817 | ATGGCTTCCGATTCTACTTCCCCCAATTTCAACAGCAACGGTCCTTCATCCCCCGACGATTCCCTTTCAAGTCCAATCGGAAACACCTTCTCCTCTCCCGGCCAGAGACGCCGCCGCCGATCTTCCACCCCATCGGCTTTCGGAACCCCGCCGGCACCCCGGTCCCGATTCGCCCCCGATGCCACCCCAACTCCCTCACGCCTCCGGCAAAGAGGCAGCGCCAGCGGCGGAGGGCGCGTCCCCCCCACGCCAACCTCCACCTCCGACGACTTTCCGGTCTCGTCGGAAGGTGGTGACGGCTACGACATGGACGACGCCAGGCCCACCTACGTTTGGGGCACTAATATAAGCGTGGAAGACGTGAACGATGCGATTCAGAGGTTTTTGAGGGACTTCAGAGAAACTTCGTCTCAGGGTGGTGATGATGAGGGGTTGCATTTGCATACCGAAGGGAAGTATGAGAAACTGATCAAACAGGTTATTGAAATTGAAGGAGAATCTCTCGACGTTGATGCACGTGACGTGTTTGATCACGATCCCGATTTGTACACCAAGATGGTAAGGTACCCACTCGAGGTGCTTGCCATTTTCGACTTGGTTTTGATGAACATGGTTAGCCGAATGAAACCCATGTTCGAGAAGCACATTCAGACTAGGATTTTCAATCTCAAAACCTCAACTTCAATGAGAAATTTGAACCCCTCAGGTGAGTTTTTGGTCTCTTCTACCATTGTCATTCAAAATTCTGTGTCGTGTTGCAACTTGCAAGCAATTAGACTGATATGGGGACTCCGTTTTTTAGATATTGAGAGAATGGTGTCGATGAAGGGAATGATTATAAGATGTAGCTCAATCATACCGGAAATTAGGGAAGCTATATTTAGGTGTCTTGTGTGTGGATTCTGCACTGACCCAATTGCTGTGGAGAGAGGTCGAATTACTGAGCCTACTGTATGCTTGAGGGAAGAGTGTCAGTCCAGGAACTCGATGACACTGGTTCACAACAGATGCAGGTTTACTGATAAGCAAATTGTGAGGCTCCAGGAGACACCGGACGAGATACCTGAAGGAGGAACACCTCACACAGTTAGCTTGCTGATGCATGACAAGCTGGTAGATACCGGAAAGCCAGGTGATAGAGTTGAGGTGACTGGCATTTATAGGGCTATGAGTGTCAGGGTTGGACCAACACAGAGAACTGTTAAGTCATTGTTCAAGACGTACATTGATTGTCTTCACATAAAGAAGACTGATAAGACTAGGATGCTGATAGAGGATGCCATGGAGGTTGAAAATAGCCAGGGAAGAAATGCAGAAGAAGTTCTCTTTGACCAAGAAAGGGTGGCTCAACTAAAGGAGCTCTCGAAAAAACCAGATATTTATGAAACGCTTACAAGGTCCTTGGCACCAAACATCTGGGAGCTAGACGATGTGAAGAGAGGTCTTCTTTGTCAGCTTTTTGGTGGCAGTGCTTTGAAGTTGGCATCTGGTGCTAGCTTCCGTGGTGATATAAATATTCTTCTTGTCGGTGATCCTGGTACAAGTAAGTCCCAACTACTTCAATACATACACAAACTATCTCCACGTGGCATTTACACCAGTGGAAGGGGGAGCTCTGCTGTTGGATTGACTGCTTATGTGACCAAAGACCCTGAAACAGGAGAAACTGTTCTTGAGAGTGGTGCCCTAGTTTTGAGTGACCGAGGTATCTGCTGTATAGATGAATTCGACAAAATGTCTGACAATGCAAGAAGCATGTTACATGAGGTGATGGAACAACAAACCGTTTCAATAGCAAAGGCAGGTATTATTGCTTCCCTCAATGCTAGGACTTCAGTGTTGGCTTGTGCAAATCCAAGTGGGTCACGATATAATCCTCGCTTGTCTGTCATTGACAATATACACCTTCCTCCGACTCTTCTGTCCAGGTTTGATTTAATTTACTTAATTCTTGACAAGGCTGATGAACAGACTGACAGGCGACTTGCCAAACATATTGTTTCCTTACACTTTGAGAATCCCGAGAACATAGAGCAGGATGTGTTGGACATTTCTACACTAACTGATTATGTTAGCTATGCCCGAAAGCACATACACCCGCAGCTGTCTGATGAAGCTGCTGAAGAATTGACTAGAGGTTACGTGGAAATAAGAAGAAGAGGAAATTTTCCTGGGAGTAGCAAAAAGGTGATAACAGCCACGCCAAGGCAGATTGAGAGTTTAATACGTCTTAGTGAAGCATTGGCTCGGATTCGCTTCTCAGAATGGGTTGAAAAGTCTGATGTACTGGAGGCATTTCGGCTTCTGGAAGTTGCCATGCAGCAGTCTGCAACGGATCACTCTACTGGAACTATTGACATGGATCTTATTACTACCGGAGTTTCGGCAAGTGAAAGAATGAGACGAGAAAGTCTGGTACAATCAACCCGCAACATAATCATGGAGAAAATGCAAATTGGGGGGCCATCCATGCGGTTGTTGGAGTTATTGGAAGAATTGAAGAAGCAGAACACTGGCAGTGAAATCCATCTTACTGATCTAAGGAATGCAATCGCTACACTCGCCGGCGAAGGATTTGTTACCATGCATGGTGACAGCGTAAAAAGATCATGA | 2613 | 0.4661 | MASDSTSPNFNSNGPSSPDDSLSSPIGNTFSSPGQRRRRRSSTPSAFGTPPAPRSRFAPDATPTPSRLRQRGSASGGGRVPPTPTSTSDDFPVSSEGGDGYDMDDARPTYVWGTNISVEDVNDAIQRFLRDFRETSSQGGDDEGLHLHTEGKYEKLIKQVIEIEGESLDVDARDVFDHDPDLYTKMVRYPLEVLAIFDLVLMNMVSRMKPMFEKHIQTRIFNLKTSTSMRNLNPSGEFLVSSTIVIQNSVSCCNLQAIRLIWGLRFLDIERMVSMKGMIIRCSSIIPEIREAIFRCLVCGFCTDPIAVERGRITEPTVCLREECQSRNSMTLVHNRCRFTDKQIVRLQETPDEIPEGGTPHTVSLLMHDKLVDTGKPGDRVEVTGIYRAMSVRVGPTQRTVKSLFKTYIDCLHIKKTDKTRMLIEDAMEVENSQGRNAEEVLFDQERVAQLKELSKKPDIYETLTRSLAPNIWELDDVKRGLLCQLFGGSALKLASGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGRGSSAVGLTAYVTKDPETGETVLESGALVLSDRGICCIDEFDKMSDNARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPSGSRYNPRLSVIDNIHLPPTLLSRFDLIYLILDKADEQTDRRLAKHIVSLHFENPENIEQDVLDISTLTDYVSYARKHIHPQLSDEAAEELTRGYVEIRRRGNFPGSSKKVITATPRQIESLIRLSEALARIRFSEWVEKSDVLEAFRLLEVAMQQSATDHSTGTIDMDLITTGVSASERMRRESLVQSTRNIIMEKMQIGGPSMRLLELLEELKKQNTGSEIHLTDLRNAIATLAGEGFVTMHGDSVKRS. | 871 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Seca5g00817 | 870 | ProSiteProfiles | MCM family domain profile. | 460 | 666 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Seca5g00817 | 870 | SMART | mcm | 257 | 774 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Seca5g00817 | 870 | MobiDBLite | consensus disorder prediction | 1 | 49 | - | - | |
| Seca5g00817 | 870 | SUPERFAMILY | Nucleic acid-binding proteins | 148 | 235 | IPR012340 | - | |
| Seca5g00817 | 870 | Gene3D | - | 444 | 778 | IPR027417 | - | |
| Seca5g00817 | 870 | Pfam | MCM OB domain | 264 | 390 | IPR033762 | - | |
| Seca5g00817 | 870 | SUPERFAMILY | Nucleic acid-binding proteins | 250 | 411 | IPR012340 | - | |
| Seca5g00817 | 870 | FunFam | DNA helicase | 441 | 779 | - | - | |
| Seca5g00817 | 870 | FunFam | DNA helicase | 288 | 340 | - | - | |
| Seca5g00817 | 870 | Coils | Coil | 830 | 850 | - | - | |
| Seca5g00817 | 870 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 589 | 602 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Seca5g00817 | 870 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 640 | 648 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Seca5g00817 | 870 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 501 | 516 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Seca5g00817 | 870 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 613 | 625 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Seca5g00817 | 870 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 561 | 575 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Seca5g00817 | 870 | Gene3D | - | 779 | 865 | IPR036388 | - | |
| Seca5g00817 | 870 | CDD | MCM4 | 464 | 772 | - | - | |
| Seca5g00817 | 870 | Gene3D | - | 264 | 400 | IPR012340 | - | |
| Seca5g00817 | 870 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 471 | 786 | IPR027417 | - | |
| Seca5g00817 | 870 | Gene3D | - | 288 | 340 | - | - | |
| Seca5g00817 | 870 | MobiDBLite | consensus disorder prediction | 1 | 106 | - | - | |
| Seca5g00817 | 870 | Pfam | MCM P-loop domain | 448 | 670 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Seca5g00817 | 870 | ProSitePatterns | MCM family signature. | 569 | 577 | IPR018525 | GO:0003677|GO:0005524|GO:0006260 | |
| Seca5g00817 | 870 | Gene3D | - | 115 | 223 | - | - | |
| Seca5g00817 | 870 | PRINTS | Mini-chromosome maintenance (MCM) protein 4 signature | 774 | 783 | IPR008047 | GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555 | |
| Seca5g00817 | 870 | PRINTS | Mini-chromosome maintenance (MCM) protein 4 signature | 283 | 296 | IPR008047 | GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555 | |
| Seca5g00817 | 870 | PRINTS | Mini-chromosome maintenance (MCM) protein 4 signature | 476 | 487 | IPR008047 | GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555 | |
| Seca5g00817 | 870 | PRINTS | Mini-chromosome maintenance (MCM) protein 4 signature | 622 | 639 | IPR008047 | GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555 | |
| Seca5g00817 | 870 | PRINTS | Mini-chromosome maintenance (MCM) protein 4 signature | 334 | 346 | IPR008047 | GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555 | |
| Seca5g00817 | 870 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | 122 | 825 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Seca5g00817 | 870 | MobiDBLite | consensus disorder prediction | 79 | 93 | - | - | |
| Seca5g00817 | 870 | Pfam | MCM N-terminal domain | 124 | 217 | IPR027925 | - | |
| Seca5g00817 | 870 | Pfam | MCM AAA-lid domain | 686 | 772 | IPR041562 | - | |
| Seca5g00817 | 870 | SMART | AAA_5 | 502 | 652 | IPR003593 | GO:0016887 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Seca5g00817 | Seca-Chr5 | 21100814 | 21106542 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Seca5g00817 | 1 | 869 | Core DNA Replication Machinery Family | AT2G16440 | 71.186 | 0.0 | 1236 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Seca5g00817 | K02212 | - | gmx:100782586 | 1439.09 |