Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g00814 ATGATTGGAGTAATGACCGTAGTACCTGCTGAGAAACGCTCATTGAATGATGGACGTATGACAAGGGTGATGCAGATGGAGCTATCTGATGATAAGGGAAAGGTTAAACTATATAAAGGCGATGTGGTTCTGCAGAATGTTATGAACACCGCTAAAATGCTATGCAATCCTAATATTTTTGAAGTGGAGGACTTTCGTAAAGGGGTTGTTGTTCATGACATTGATATATTGGCACCAATGGGTGTTATACAGGATGATTATCATAACATTCCACCAAAAGAGGAGTTCCTTGCCTCTCATCCTAGGAAGGTAATCAAACAACTACACAACACTGAGGAGAAAGGAATGTTCATTGTTTTGGCCTCAATAATGACGGTTTTAGGAGATGGGAATTCGTGTTATGCAGCTTGCAAGTTCCATCGAGTTGTGACCATGGATGGAGATAGTTACTACTGCTCATCATGCGACATGCATTTGCGTAAGGTTTTGTCCAGGTACAAGTTGAAACTTGAAGTTTATGATGGAGAGGACATAGTTGCCTTTATTAGGTTTGATACAGACGTTGAGATATTTCTTGGACGCAGTTGTGCTGCAATGCTATCTTACTTGAAGGATATTGGTGGTTCAAGTGCCATATCAAAGAAAGAGTCAACCAAGATCAATATTGAGTTAAATTCAATGTCATTAGATGACGTAATGACTGACCTTTTTGGGTGTTATGCCACCAATGAGTCTATTATAAGTGGTGGGTCAAAGGTGAATGTCAAAGGCATGAAGAAGCTTAGGCTTAAGCAGGTGGTTAACTATGTTGTGTGGCGTGGTAGGTGGACGTCTCCTGCAGTGTTTGTTAAAGTTCTAAGCGTGTTTTATGTTTTCCGAATAAATAACCTAACTAGGTACAACGGTTGTACAGTTGAAACTATAGAATTTGGCAGGACACTAGCCACTGTGCCTCTTCCGAATCTCCTATACCGAATCACCTTTCTTATCCCTCCCTCACATTCACGACCGCCGCGCTCCACTGCATCATTTCGGAGCCACAATGAGCTGGCCCCTTTTCCCATCATGTCTTCTGCTTTATATGATTTTGACATTTTGTGGATATGTATTATGTGA 1116 0.4113 MIGVMTVVPAEKRSLNDGRMTRVMQMELSDDKGKVKLYKGDVVLQNVMNTAKMLCNPNIFEVEDFRKGVVVHDIDILAPMGVIQDDYHNIPPKEEFLASHPRKVIKQLHNTEEKGMFIVLASIMTVLGDGNSCYAACKFHRVVTMDGDSYYCSSCDMHLRKVLSRYKLKLEVYDGEDIVAFIRFDTDVEIFLGRSCAAMLSYLKDIGGSSAISKKESTKINIELNSMSLDDVMTDLFGCYATNESIISGGSKVNVKGMKKLRLKQVVNYVVWRGRWTSPAVFVKVLSVFYVFRINNLTRYNGCTVETIEFGRTLATVPLPNLLYRITFLIPPSHSRPPRSTASFRSHNELAPFPIMSSALYDFDILWICIM. 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g00814 371 Gene3D - 97 270 IPR012340 -
Seca5g00814 371 SUPERFAMILY Nucleic acid-binding proteins 101 205 IPR012340 -
Seca5g00814 371 Pfam Replication factor-A C terminal domain 117 205 IPR013955 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g00814 Seca-Chr5 21046441 21049009 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g00814 33 205 Core DNA Replication Machinery Family AT4G19130 24.870 9.04e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g00814 - K07466 lja:Lj3g3v3527180.1 162.925