Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g00813 ATGTCCTCCACAACACAAGGTGGTGGGCAAGAAGAATTAGTAGTAAAGGGATCAAAGTGTGAAGATTGTGGGAACCAAGCTAAGAAGGATTGTGCATACTCAAGGTGCAGAACTTGTTGCAAAAACAAAGGCTTTCACTGCCAAACCCATATCAGAAGCACTTGGATTCCTGTGGACAAAAGGCGCCAGAGAGTGGAGCAACAACCACCACCTCTACACCACTTTCAGGCTCAGGGTGGAGATGTCCCTAAAAGGCACAGGCAGAATAATCCATATTCAAGTTTAGAAGAGTTCAAATTTCCAGCAGTTGTGAATTCCATGGCAGTATTCAGCTGTGTTCGGGTGCGGTCTATGGATGAGACGGTTAATGAAATTGCTTATCAAACATCAGTCAACATTGGAGGACATGTGTTTAGTGGTCTTCTTTATGATCAAGGCCCTCAACAAGATCAACAAACCTTCAATGCTAAGGGTGAAAGCTCCTCCATAGACCCAATAAATCATCAGCACCACAATAATGATCTCAATCTAATTGGTGCAAGTAGTGCAATTACTATGGCTCCTCCTCTATCAACAACTCATCATGAGCTTCTTTTTCCTCCACCTCATCCTTTAGCTAATTCCTTCAGGCCCGGTATGCCATATTTTTCACTCCCAAAACCTTAA 666 0.4324 MSSTTQGGGQEELVVKGSKCEDCGNQAKKDCAYSRCRTCCKNKGFHCQTHIRSTWIPVDKRRQRVEQQPPPLHHFQAQGGDVPKRHRQNNPYSSLEEFKFPAVVNSMAVFSCVRVRSMDETVNEIAYQTSVNIGGHVFSGLLYDQGPQQDQQTFNAKGESSSIDPINHQHHNNDLNLIGASSAITMAPPLSTTHHELLFPPPHPLANSFRPGMPYFSLPKP. 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g00813 221 NCBIfam LRP1 C-terminal domain 99 147 IPR006511 -
Seca5g00813 221 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 12 183 IPR007818 GO:0003700|GO:0006355
Seca5g00813 221 NCBIfam putative zinc finger domain, LRP1 type 19 61 IPR006510 -
Seca5g00813 221 Pfam Domain of unknown function (DUF702) 17 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g00813 Seca-Chr5 21000816 21002500 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g00813 20 144 C2H2 Transcription Factor Family AT3G51060 53.237 1.89e-45 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Seca5g00813 DUF702 3.6e-50 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g00813 - - gmx:100790751 265.003