Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g00807 ATGAAGATCCAGTGTGATGTGTGTCACAAAAAGAAGGCCTCCCTGTTCTGCCCTTCAGATGAAGCAGCTCTCTGCCATGACTGTGATCATACCATCCACCATGCCAACAAGCTTGCAGGCAAACACAAACGCTTCTATCTGCTCCATCCCACCTCCAAAGACTCCCCTCTCTGTGATATCTGCCATGAAAGGCGTGCATATCTGTTTTGCCAAGAAGACAGAGCAATACTTTGCAGAGAATGTGACCTTACAATCCATGGAGTCAACGAACATACCCAGAAACACAACAGATTTCTTCTCACTGGAGTAAAGATTGGTGTTGTTGCTTCTTCAGACCCAACATCATTATTTTCCAATGGCACTGGCTCTGAAATTGGAATCACTGGTTCTACAATAAACAGATCAAGTTCATCTTCAAATGAAAATACCAGTTCTTGTCTCATGGTTGAGCTTGAAGACAATAAGGCTTGTGACACCGGTTCAGTTTCAACAAGCAGCATTTCAGAATACTTGATTGAGACAATTCCCGGTTACTGCATGGAAGACCTTTTTGATGCTTCTTTTGCACCTAATCTTTTCTGTAAGGATTATGAGCATCAATTAGAGTTTGACCAAGATCTTCAAGAGATCAACATGTGTTCCTCGTTTCCACTGCAAGCGTGGGTACCGCAATCTCAAGTTAGAACACCTCAACTTAGCACTTTGAATGTTCCAAAGATTGATTCTTTAGTTGGGGTCATGGAAATGCCACAAACGAATAAAGCTAGTGAAGGATACTCGAATTGGAGATACAATGGCTACGCAAGTCACAATGTTCCTTCTATTAGTCCTCCATTGATAAAACGATGTAGACGCTCTCGTTAG 864 0.4225 MKIQCDVCHKKKASLFCPSDEAALCHDCDHTIHHANKLAGKHKRFYLLHPTSKDSPLCDICHERRAYLFCQEDRAILCRECDLTIHGVNEHTQKHNRFLLTGVKIGVVASSDPTSLFSNGTGSEIGITGSTINRSSSSSNENTSSCLMVELEDNKACDTGSVSTSSISEYLIETIPGYCMEDLFDASFAPNLFCKDYEHQLEFDQDLQEINMCSSFPLQAWVPQSQVRTPQLSTLNVPKIDSLVGVMEMPQTNKASEGYSNWRYNGYASHNVPSISPPLIKRCRRSR. 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g00807 287 FunFam B-box zinc finger protein 21 1 98 - -
Seca5g00807 287 CDD Bbox1_BBX-like 5 47 - -
Seca5g00807 287 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Seca5g00807 287 CDD Bbox1_BBX-like 57 100 - -
Seca5g00807 287 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270
Seca5g00807 287 Gene3D Classic Zinc Finger 1 99 - -
Seca5g00807 287 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 275 - -
Seca5g00807 287 Pfam B-box zinc finger 4 43 IPR000315 GO:0008270
Seca5g00807 287 Pfam B-box zinc finger 55 92 IPR000315 GO:0008270
Seca5g00807 287 SMART bboxneu5 53 100 IPR000315 GO:0008270
Seca5g00807 287 SMART bboxneu5 4 47 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g00807 Seca-Chr5 20795273 20796930 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g00807 1 287 C2C2-CO-like Transcription Factor Family AT1G75540 37.538 9.08e-60 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Seca5g00807 zf-B_box 6.9e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g00807 - - gmx:100790232 389.037