Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g00805 ATGGTGACTAAGGCAACTATTGCAAGTGATTTGGGAAGGGACTGTTCTGAGGAGGACAAGCTAGCATTTAAAGAAGGGTTCAATAGAGTCATTTCACTCTCTGATAGCATGATTCAGTTCATGAAGGTTTTGGAGCATCGAGTGAACAAAATGGATGAACACATTACTGAGTTGGTTGCAAGAGTTGACAAGTTTAATTTGAATCTTGATACACTTGTCACTGTCACTAATAATATGAACTCTGAAATAGCAAAGTCCACTAAAACTGAATGCTCAACAAAAATGGATCAAAATATTGGGTCCACGCATCCACCTGAGCCTGAACCCATACTGAGCCCACCCATTAAAAAGGACTGGCCTTTCGATAAGCAAGTCAAGGATGGGCCCATAAAATCTTTAACAGAACTTTCTCCAAAATTCGTTAGGAACATCATTTTTGATGTATCCGACGAGGAAGAGGGAGACGAGATGGAATTTGATCCCACAAACGTTGAGGTTCGTGAAGTCACAAGAACGAAGAAAAAAAGCTCTCCTATTGAAGGCCAGTGTAGCAAAGATGAGAATACATCCCATAACAGAGGCAGAATAACACGTTCCAATTATGTTCGTCGTTGTAGGGGTTCCACACGTGACGACTCAAAGCTCTCTGGGAAGAAGTTATTCCAAACCCCTTCTTCAAAGTCCCCAGGTGAAGGCTCAAAAAGGTTCAGAGCACAAGACGGGAGCACTAACCCGGAAAATGATGCTGCACAGAACCATACACCAGACAGAAAGAAGGATGGTTTGGATGAAAGTACCATAAAGACTCCATCATCCAATATCTTACCAAAGACAATGTTTTCAAGGTTTAGGCCTTCAAATGACATGAAACTCACTGAGAGGGAAGTTAAGATTGTTGCATACATCTTTTCCTACGATGGAGACGAGGATGACATATTAGTGAAGATTTCTGACTTTGTAGCAACAAGGAAAGATTTTGTATCCCTTTGTCCAGATCGACTCGTCAACAACAAGATAATGACACTGGCCACACTCAAGGGATCTTGGGCACAATCTCGGAAATCAAACAAGTCAGTTTGGTATTTACCACCAAATTTCACGGATGATGTTCTTGAGGGTTGCACAACCGATGAGTTGATTTCAAAATATGCTAGAATGTGGATGCAGCCCTACCCTCAGCTTAAATATGTAAACCTCCGGTGGGAAGATATTAGGAGGAATACTATTCGAAATGTGTGTGAGGCATTGACAAATATGATGACATCTGAGGCATATCCAGAAGACTTTCTTAATTCTGGTGACAAAATTGACATGTGGGAGTTATTTGTTGCCAGAAATGTTATAAATGGATCGACTGTAGAAAACTCTGCCATATGGTTATTGGACTGGATGGAGATGGAAAGTGCATTTCACACAAATGTAATAGCCTTGATTAATGAACGTCACATTCGCATGCGTTGTGCTTTGAATCTGGTCTGTGGAGAACACAATGAATACAACCAGGTAGTGGCTGATCAAGCTGAATCGGATGATGATGATTTGATTGGGGTTCCTTTCATGGCATCTTGGCTACCATATCGGTCCTCAATCATAATTGCAAAAAAATTGATTTCAAGTTTTCGAGCAGAGTTACCAAAAGAGGTGACTCTAAGAGATCCGGTTGGAAATGAATTTCCTGTTTCCATTGAGGAGTTAACCAACAGACACTGCTTCACAAAGGGTTTGCCACAGATGAGGGCTTTTTACCATGTTCATTATCCACTGCACATGTGGTACAGATACGTTGGAAATGCTACATTCAGCTTTGAACTATGGCCTATAGATGGAGAAGGCCAGATTGATTATCCTAATCCCGCTTTAAAAAAGGAAGATCATGAACAATGTGTCAACCAACCTGTGACAACATCAGCCAGTCATGACGAAGATGTAAGTAGTGAAGCAGATGAAATCATGGGAGTTCCCGGTGCAGACATATGGACGACTACACTTACTCAGGCACAGGTGGAAGGCAGGAGGGCAGTGGTTATACCAGGGAGGGCTGTGACCACTTACTTCCACAACAGGCCAAAGAAGATCCGAGTTAGATTACCAGATGACCATATCAAATCGTGGGAATTGATTTGGAATCGACGAATCCCGACAGAGTGCAAAATTGGACATGGTTGGAGTGAATTTTGTACCACACATGGGCTGCAAAAGGGAGACCACATTAGGTTTTGGAAATTGGAAAATGAAGCGTTCATCAGAATCGTTCGAACAAAATCCTCAACTTAG 2274 0.4182 MVTKATIASDLGRDCSEEDKLAFKEGFNRVISLSDSMIQFMKVLEHRVNKMDEHITELVARVDKFNLNLDTLVTVTNNMNSEIAKSTKTECSTKMDQNIGSTHPPEPEPILSPPIKKDWPFDKQVKDGPIKSLTELSPKFVRNIIFDVSDEEEGDEMEFDPTNVEVREVTRTKKKSSPIEGQCSKDENTSHNRGRITRSNYVRRCRGSTRDDSKLSGKKLFQTPSSKSPGEGSKRFRAQDGSTNPENDAAQNHTPDRKKDGLDESTIKTPSSNILPKTMFSRFRPSNDMKLTEREVKIVAYIFSYDGDEDDILVKISDFVATRKDFVSLCPDRLVNNKIMTLATLKGSWAQSRKSNKSVWYLPPNFTDDVLEGCTTDELISKYARMWMQPYPQLKYVNLRWEDIRRNTIRNVCEALTNMMTSEAYPEDFLNSGDKIDMWELFVARNVINGSTVENSAIWLLDWMEMESAFHTNVIALINERHIRMRCALNLVCGEHNEYNQVVADQAESDDDDLIGVPFMASWLPYRSSIIIAKKLISSFRAELPKEVTLRDPVGNEFPVSIEELTNRHCFTKGLPQMRAFYHVHYPLHMWYRYVGNATFSFELWPIDGEGQIDYPNPALKKEDHEQCVNQPVTTSASHDEDVSSEADEIMGVPGADIWTTTLTQAQVEGRRAVVIPGRAVTTYFHNRPKKIRVRLPDDHIKSWELIWNRRIPTECKIGHGWSEFCTTHGLQKGDHIRFWKLENEAFIRIVRTKSST. 758
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g00805 757 ProSiteProfiles B3 DNA-binding domain profile. 659 754 IPR003340 GO:0003677
Seca5g00805 757 CDD B3_DNA 660 745 IPR003340 GO:0003677
Seca5g00805 757 MobiDBLite consensus disorder prediction 218 250 - -
Seca5g00805 757 MobiDBLite consensus disorder prediction 169 193 - -
Seca5g00805 757 MobiDBLite consensus disorder prediction 169 273 - -
Seca5g00805 757 Pfam B3 DNA binding domain 660 750 IPR003340 GO:0003677
Seca5g00805 757 MobiDBLite consensus disorder prediction 86 123 - -
Seca5g00805 757 SUPERFAMILY DNA-binding pseudobarrel domain 658 754 IPR015300 -
Seca5g00805 757 SMART B3_2 659 754 IPR003340 GO:0003677
Seca5g00805 757 Gene3D - 639 755 IPR015300 -
Seca5g00805 757 MobiDBLite consensus disorder prediction 86 100 - -
Seca5g00805 757 MobiDBLite consensus disorder prediction 251 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g00805 Seca-Chr5 20776469 20780836 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Seca5g00805 B3 2.8e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g00805 - K08592 lja:Lj1g3v3704680.1 162.54