Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g00804 ATGACTGTCGTTATGGATAACATTAATGAAAACGTTGGTGAGAATGTTGTTGGGTTGGAAGAAATTGAAAGTGAAGATGATTGTGAGAATGCATTTCATTTTGACTCTCGTGAATTTGTTCTTGGGGTGGATTCTGAGGCAGATTTTGTTGACCTTAATCCTGAGTTGTTAACTGAGGAAAATGTGAAGAATTTAAGTTTTCCTAATTTGGATGTTGCTTATAAATTTTACAATAATTGGTATGGAAAATTGAAGGGTTTTTCAGCACGAAAGGGCAAAGAACGTAAAAATGGAATGGAAGAAATTATTGAGAAGACCTATCTTTGCCATAGGGAAGGAAAGAGACCAATTAATACGAATGAAAGGACTGGGAAGAAAAAACGTGAAGCAAAGCCTGAGACAAGGTGTTTATGTCCTGCAAAAATGAAGGTTCGGTTAGATGTACATTCTGGCCGTTGGAACGTGACCAAGTTTTGTGATGCCCATAATCATGAAATCCTGAACCCCAAATACACAGGGATGCTACCGGCTCATAGGAAATTGAGTGAAGCTGATATCTTGGAGATGAATAACATGCGGAATGCAGGTATTACTACACCTCAAATTTATGGGTCATTTTCCAGCCAATCTGGTGGGTACAACAATGTTGGTTTTCGGAAAAGAGATCTTTACAATGAGATTTGTAGGCAAAGAATGTTGCAGCTAAGTGATGCTAAGGGTGCAATTGAGCACCTACGTGAAACGGAGCAGAATGAAGGGTCAATGTTTTGGAGGCACACGACTGACTCAGAAGGCCGACTCCAGCGATTATTTTGGTGTGACGGTCAGTGCCAAGTTGATTACAAATTATTTGGTGATGTCCTTGCCTTTGATGCCACATACCGTAAGAACAAATATCATTTTCCTTTGGTAGTGTTTTCTGGCATAAACCACCATAATCAAAGCACAATATTTGCTAGTTGCCTAGTTGCAGATGAAACTGAGGAAACTTATGTTTGGGTTTTGGAACAGTTGATGGTGGCAATGAAAGGCAAGATGCCTTCAGCCGTGATAACAGATGGTGATCTTGCTATGCGGAATGCTATCAAAAGAGTGCTTCCTAATGCACACCATAGTCTTTGTGCATGGCACCTGTGTCGTAATGCTGCTAGTAATGTTAAAAATCCTAAGATGGTTTCGATGTTTAGGAAATGTATGTTGGGTGACTATGAGGTGTCTGAGTTTAAACACAGGTGGGAGGTAATGGTGAAGGAATTTCGACTTGAGGAAAACAATTGGGTGAAGGAATTGTATGAGAAAAAGAGGATGTGGGCCACAACATACATTAGGGGAAATTTCTTTGCCGGGTTTAGGACAACGTCTCGATGTGAGGGGCTTCATGGGCAACTTGGGAAGTTTGTTCACTCCCGGACCGATTTGGTTGGTTTTCTGAAAAATTATGGTCGTTTCCTTGAAGTACTAAGGTATAATGAGTTAGAAGCAGATTTGGAATCAGTACGTGGTGAAATGGTCCTTGAGACTAACTTGCATGCACTAGAGAGATCAGCCTCTAAGATTTTCACAAAGGAGGTTTTCATATTGGTACGGCCCGCCCTTGCCAGGGGAAGCACTATGAGGGTCATGGGTTGTACACAGTTGATGTCACAAACCATTTTCACAGTGTCCAAGTATGGTACATCACAGAAGGAGTGGCAAGTGTCATATATTGCAGAACCACTTTTCCTTAAATGTTCTTGTCAAAGAATGGAATCTTTTGGTCTTCCTTGTGATCACATAATTGGTGTGATGGTACACTTGAACATACAAGAGATGCCGAAGTGTCTTGTGCTCAGTAGGTGGACCATGGGTGTGAAGGATAGTGCTTATGAAATTAGGGATGGACGCAAATCGATTTGGGATTCTATGTTTGATGCACGTTGTGGTTATTTGGACTTTTTGTGTAAGAAGATGAATAGATTGGGGGTAGATCTGCTACAAGATTCAACGAGATTAAGGACTGGGTTAGCACAAAAATAA 2016 0.4082 MTVVMDNINENVGENVVGLEEIESEDDCENAFHFDSREFVLGVDSEADFVDLNPELLTEENVKNLSFPNLDVAYKFYNNWYGKLKGFSARKGKERKNGMEEIIEKTYLCHREGKRPINTNERTGKKKREAKPETRCLCPAKMKVRLDVHSGRWNVTKFCDAHNHEILNPKYTGMLPAHRKLSEADILEMNNMRNAGITTPQIYGSFSSQSGGYNNVGFRKRDLYNEICRQRMLQLSDAKGAIEHLRETEQNEGSMFWRHTTDSEGRLQRLFWCDGQCQVDYKLFGDVLAFDATYRKNKYHFPLVVFSGINHHNQSTIFASCLVADETEETYVWVLEQLMVAMKGKMPSAVITDGDLAMRNAIKRVLPNAHHSLCAWHLCRNAASNVKNPKMVSMFRKCMLGDYEVSEFKHRWEVMVKEFRLEENNWVKELYEKKRMWATTYIRGNFFAGFRTTSRCEGLHGQLGKFVHSRTDLVGFLKNYGRFLEVLRYNELEADLESVRGEMVLETNLHALERSASKIFTKEVFILVRPALARGSTMRVMGCTQLMSQTIFTVSKYGTSQKEWQVSYIAEPLFLKCSCQRMESFGLPCDHIIGVMVHLNIQEMPKCLVLSRWTMGVKDSAYEIRDGRKSIWDSMFDARCGYLDFLCKKMNRLGVDLLQDSTRLRTGLAQK. 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g00804 671 PANTHER OS01G0519700 PROTEIN 58 633 - -
Seca5g00804 671 Pfam MULE transposase domain 287 381 IPR018289 -
Seca5g00804 671 Pfam FAR1 DNA-binding domain 76 167 IPR004330 -
Seca5g00804 671 Pfam SWIM zinc finger 572 600 IPR007527 GO:0008270
Seca5g00804 671 ProSiteProfiles Zinc finger SWIM-type profile. 564 600 IPR007527 GO:0008270
Seca5g00804 671 SMART 26again6 575 602 IPR006564 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g00804 Seca-Chr5 20767991 20776237 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca5g00804 MULE 3.2e-28 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g00804 - - tpra:123913749 653.284