Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g00789 ATGGAAGTTGCGGTGGCGAAAGCTTTGAAACCAAGCTTGCAGACAGAGTTTATTTTCCCGCAGACAATTTGCAACGAGATTTTATGCTTGAACGCAAACAACGTTGTTGTTGGTGAAGATTTCTCCGTTGATGACCTGCTTGATTTCTCCAACGGAGAATTTCAATTTGGAAAAGAAATTGATAATTATAAAGAAGAGGAAGACGAAGAAAATGACAGCACCACCTCAGGTTCCTCACAGGACCGAATAGAAGATGATAACAACTCCAATTCCACCGATTTTTCCGGCGCCGGCGATTCTGACTCCATTTTTGCCGGTGAATTGGCAGTTCCGGCTGATGATATGGCGGAACTTGAATGGGTGTCTCACTTTGTGGACGATTCTCTCCCGGAGCTCTCTCTATTGTACCCTGTCCGTTCCGAACAACCACGGGCTCGGGCCGAACCGGAACCTAGACCGGGCTCCGCGAAACCTCCTTCTCATCCCTCTGCAATCCGGAGCAAGCCCAGAACCACCAAAACTAGAAAACCCATCAGTCACGTGTGGTCGTTTAACCCCACGCTATCTCTGCCGACTTTCGTGTTCAACGAGCCGCCGGTGAAGAAGCAGAAGAAAAAGCCCGAGGTCCAAACTGGTGGGCCTCAGGTTCAGCGTCGGTGCACCCACTGCCAGGTGCAGAAAACACCACAGTGGAGGACCGGCCCACTGGGCCCAAAAACCCTTTGCAACGCTTGTGGGGTTCGTTTCAAGTCCGGTAGGCTTTTCCCAGAGTATCGACCGGCCTCGAGCCCGACCTTTTCCGGCGATATTCACTCAAACAGCCATCGTAAAGTGTTGGAGATGAGGCGAAGGAAGGAGATTGCTGGACCGGTTTCCGGTTCGGACCAGACTCAAATGGTTCCAACATGCTGA 912 0.5121 MEVAVAKALKPSLQTEFIFPQTICNEILCLNANNVVVGEDFSVDDLLDFSNGEFQFGKEIDNYKEEEDEENDSTTSGSSQDRIEDDNNSNSTDFSGAGDSDSIFAGELAVPADDMAELEWVSHFVDDSLPELSLLYPVRSEQPRARAEPEPRPGSAKPPSHPSAIRSKPRTTKTRKPISHVWSFNPTLSLPTFVFNEPPVKKQKKKPEVQTGGPQVQRRCTHCQVQKTPQWRTGPLGPKTLCNACGVRFKSGRLFPEYRPASSPTFSGDIHSNSHRKVLEMRRRKEIAGPVSGSDQTQMVPTC. 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g00789 303 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 216 277 - -
Seca5g00789 303 ProSiteProfiles GATA-type zinc finger domain profile. 214 250 IPR000679 GO:0006355|GO:0043565
Seca5g00789 303 MobiDBLite consensus disorder prediction 140 177 - -
Seca5g00789 303 SMART GATA_3 214 264 IPR000679 GO:0006355|GO:0043565
Seca5g00789 303 PIRSF Txn_fac_GATA_plant 13 301 IPR016679 GO:0003677|GO:0005634|GO:0045893
Seca5g00789 303 Gene3D - 212 286 IPR013088 GO:0006355|GO:0008270
Seca5g00789 303 ProSitePatterns GATA-type zinc finger domain. 220 245 IPR000679 GO:0006355|GO:0043565
Seca5g00789 303 MobiDBLite consensus disorder prediction 76 98 - -
Seca5g00789 303 PANTHER GATA TRANSCRIPTION FACTOR 30 294 - -
Seca5g00789 303 MobiDBLite consensus disorder prediction 61 100 - -
Seca5g00789 303 FunFam GATA transcription factor 210 297 - -
Seca5g00789 303 CDD ZnF_GATA 219 276 IPR000679 GO:0006355|GO:0043565
Seca5g00789 303 Pfam GATA zinc finger 220 253 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g00789 Seca-Chr5 20139629 20141435 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g00789 8 286 C2C2-Gata Transcription Factor Family AT5G66320 38.272 1.47e-51 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Seca5g00789 GATA 5.4e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g00789 - - gmx:100776188 396.741