Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g00783 ATGATATGCATGGAAAGGCTGGGGAGCCAAATTGCTGGGTGTTCAAGCAAACCTTCCAGAGCTTCATTAGTGTGGAAACTTTGTAGCAAAAATGCATCTGAAAATCATAGGGGCTCATGGCATTATCCAAAGATTTCACCTCACTTGTTTCCATGGAAAAGTGCAACATACTTAAGAAACTGCAATAGTAGTTCCTCATCTGCTATCAGAAAGAAATTGCTTCTGTCGAGAAAGAGGGATACTGTTTACACTAGGTCGACCCATGGGTTTTCTCTTTGGAAATCCAAGGTATTAGGTGTTGGTGGGTCTAGTTTAAAATGGTCCAGATCCGTTGAGAAGCACTCAAAAAAAGCTAATGAGGAAGCCACACTTGCTGTTGCTGCAGTTGAGAGGAAAAAGAGAGAGCAGAGAGATGCAGCTTGCATTGGTTCTCAGGCAAAGAGAGAACGTATATTTCGAGTTGGTTCAGTTCGCTACAGAATGGATCCTTCCAGACGGACACTTCAGAGGATTTCAGATGATGAGTCCCTATCCTCTGCCTCTCCCTGTTCGAGTTTAGCTTCCAAAAGAACTTATATTCCAAGGAGATTAGTGATTGGAAATGATGAATATGTCCGCATTGGCAATGGTAACCAGCTTATCAGAGACCCAAAGAAACGAACTAGAAAATTGGCAAATGAGAAAGTCAGATGGAGCTTGCACACTGCCAGACAGCGGTTGAATCGAAAGCAGAAGTATTGTCAGTTTTTCACAAGATTTGGGAAATGTAACAAGGATGAAGGGAAGTGTCCTTATATTCATGATCCTTCAAAAACCGCTGTCTGTACTAAGTTCCTGAGTGGTTTATGTTCTACTCCCAACTGCAAATTGACTCATAAGGTTATTCCAGAGAGAATGCCAGACTGTTCTTATTTTTTGCAAGGATTATGCTCAAATAGAAATTGCCCATATAGACATGTCAATGTGAACCCTAAGGCATCTGTATGTGAAGGATTTCTTAAGGGTTATTGTGCTGATGGGAATGAGTGTCGGAAAAAGCACAGCTATCTCTGTCCTATTTTTGAAGCAACAGGAACCTGTACTCACGGAACAAAATGCAAGCTTCACCACCCAAAAAAACAAAGCAAGGGAAAGAAAAGAAAGAGATCTGGAGATCAGAACAGTAGAGAGCGTTACTTTGGTTCTATTCCCATTGATGTTTCCGAACCTGGGATGATGATGCCTACAAGGCAATGTCAACACAAGGATGACCTTGAAAATGAACTTTCCAATTTCATCGGTCTTGATGTGAATGAAGAAGTTACAGACACCGTTGATCAATCATTTGAGCAGTCAACATGTTGTGACAATGATTCCTTGGAATTACAGTTGGATACTTCTGATGAACTTATTAAACCGGTTTTTCTAATAACAAAATTCACATCGCAATCATCTCAGTTCCTGGAAGTTTAG 1452 0.4084 MICMERLGSQIAGCSSKPSRASLVWKLCSKNASENHRGSWHYPKISPHLFPWKSATYLRNCNSSSSSAIRKKLLLSRKRDTVYTRSTHGFSLWKSKVLGVGGSSLKWSRSVEKHSKKANEEATLAVAAVERKKREQRDAACIGSQAKRERIFRVGSVRYRMDPSRRTLQRISDDESLSSASPCSSLASKRTYIPRRLVIGNDEYVRIGNGNQLIRDPKKRTRKLANEKVRWSLHTARQRLNRKQKYCQFFTRFGKCNKDEGKCPYIHDPSKTAVCTKFLSGLCSTPNCKLTHKVIPERMPDCSYFLQGLCSNRNCPYRHVNVNPKASVCEGFLKGYCADGNECRKKHSYLCPIFEATGTCTHGTKCKLHHPKKQSKGKKRKRSGDQNSRERYFGSIPIDVSEPGMMMPTRQCQHKDDLENELSNFIGLDVNEEVTDTVDQSFEQSTCCDNDSLELQLDTSDELIKPVFLITKFTSQSSQFLEV. 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g00783 483 Coils Coil 119 139 - -
Seca5g00783 483 PANTHER CCCH ZINGC FINGER 16 471 - -
Seca5g00783 483 Gene3D - 323 387 - -
Seca5g00783 483 MobiDBLite consensus disorder prediction 365 380 - -
Seca5g00783 483 Gene3D - 268 322 - -
Seca5g00783 483 ProSiteProfiles Zinc finger C3H1-type profile. 241 270 IPR000571 GO:0046872
Seca5g00783 483 ProSiteProfiles Zinc finger C3H1-type profile. 323 350 IPR000571 GO:0046872
Seca5g00783 483 FunFam Zinc finger CCCH domain-containing protein 7 324 385 - -
Seca5g00783 483 SMART c3hfinal6 350 372 IPR000571 GO:0046872
Seca5g00783 483 SMART c3hfinal6 241 269 IPR000571 GO:0046872
Seca5g00783 483 SMART c3hfinal6 296 321 IPR000571 GO:0046872
Seca5g00783 483 SMART c3hfinal6 270 294 IPR000571 GO:0046872
Seca5g00783 483 SMART c3hfinal6 323 349 IPR000571 GO:0046872
Seca5g00783 483 MobiDBLite consensus disorder prediction 365 389 - -
Seca5g00783 483 ProSiteProfiles Zinc finger C3H1-type profile. 296 322 IPR000571 GO:0046872
Seca5g00783 483 FunFam zinc finger CCCH domain-containing protein 3 271 322 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g00783 Seca-Chr5 20002182 20006882 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Seca5g00783 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g00783 - - mtr:25482449 737.258