Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g00768 ATGGCTCCTTTCAGCGGCGATGAGACGGCACCGTTTTTTGGCTTCCTTGGAGCCGCAGCTGCCCTTGTCTTCTCCTGTATGGGAGCTGCCTATGGAACAGCAAAGAGTGGTGTTGGTGTGGCTTCGATGGGTGTAATGAGACCAGAGCTGGTGATGAAGTCTATTGTCCCTGTTGTTATGGCTGGAGTTTTGGGTATTTATGGCCTTATTATTGCTGTTATAATCAGTACTGGTATTAATCCCAAGGCCAAGTCTTATTATCTCTTTGATGGTTATGCACATCTCTCCTCTGGTCTTGCCTGTGGGCTTGCTGGGCTCTCTGCTGGCATGGCTATTGGTATTGTTGGTGATGCTGGTGTTAGGTATAATTCTTCTGCCTTAATGTCTGGTCTATGA 396 0.4747 MAPFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRYNSSALMSGL. 132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g00768 131 Gene3D - 10 129 IPR035921 -
Seca5g00768 131 FunFam V-type proton ATPase proteolipid subunit 10 130 - -
Seca5g00768 131 NCBIfam V-type ATPase subunit C 12 120 IPR011555 GO:0033179|GO:0046961|GO:1902600
Seca5g00768 131 SUPERFAMILY F1F0 ATP synthase subunit C 12 76 IPR035921 -
Seca5g00768 131 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 4 124 - -
Seca5g00768 131 SUPERFAMILY F1F0 ATP synthase subunit C 86 121 IPR035921 -
Seca5g00768 131 CDD ATP-synt_Vo_c_ATP6C_rpt1 12 79 - -
Seca5g00768 131 Pfam ATP synthase subunit C 16 75 IPR002379 GO:0015078|GO:0033177|GO:1902600
Seca5g00768 131 PRINTS Vacuolar ATP synthase 16kDa subunit signature 106 131 IPR000245 GO:0033179|GO:0046961|GO:1902600
Seca5g00768 131 PRINTS Vacuolar ATP synthase 16kDa subunit signature 29 53 IPR000245 GO:0033179|GO:0046961|GO:1902600
Seca5g00768 131 PRINTS Vacuolar ATP synthase 16kDa subunit signature 55 79 IPR000245 GO:0033179|GO:0046961|GO:1902600
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g00768 Seca-Chr5 19305104 19306640 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g00768 1 125 Primary Pumps ATPases(2) AT2G16510 96.000 9.14e-81 233
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g00768 K02155 - gmx:100812380 218.394