Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g00728 ATGACAGTTGAGAGAAAGTTTGTTTTGGTTGGGATTAGAATTGATAGCCATAGTAGACAACTCCTCAACTGGGCTCTTGTCAAAGTTGCTGAACCTGGGGATTGTGTTATTGCAGTCCATGTAGTTAAAAGTTCAGATTATGTTTCCAAAAACAAGAGCCTGATAGATGAGTATTTAGAGGTCTATGAAGGCCTGTGTGGTGTGAAGAAGGTTGATCTCACTGGTCAAATCTTAACAGGAAACTCCATTAGAAGCATTCTTGTTAGAGAAGCAAAAAACCATGCTGCTCTGGCTCTAGTGGTAGGGGGTCGAGCTGCCACAGCTAAATATTGTGCCAAACGACTACCACCCACCACCAATGTTCTAGCCATCAAAGATTCAAGAGTTGTCTTCAGGAGGTGCACCAATAAACAACTACCAGGTAGTCTTATAGTGGATCCAAGACCAAGTTTAACAAGCATAGAGAGCCTGAGTGAGAGAGTAACCCAGTCTGAATTTGGTGACTCTGTCTCTATGGTGGAGAGAGAGAAACCAACACCTCAAAATACCATAGATCAATTGAAGGAAGAATCATTTGATAGATTAGGAAGGTGCAAGTCAAGGTCAATATCTATGTTTGCAGGTGATCCTACTGAGCAGAAGCTTGGATGGCCTCTACTCCGCAGAGCCAATTCAGGAATCTCACAAACTCGGCATTCAAGGGACATGTCAGTAGTACAATGGGTGATGACCTTACCAGATCGCTCACCACGTAAAAGTCCTCAACCTTCTTCCATTGAGGAAAATCCATTCCAAAGGAGCATCAGTGACATTGAGGATGAGAGTTCAGAAAATTCTTCACCTACATCTGTTGAACTACCAAAAGGCCTAGAGGGGATGTTAAACATTGATTCACTCAGTTGCAAGTGGTTCAGCCTTGAGGTTCTAAAGTCTTACACAAACCAATTCTCTTCAGAAAACTTGATTGGGAAAGGAGGGAGCAATCGTGTGTACAAAGGAGTTCTCCCTGATGGAAAGCTAATTGCTGTTAAAGTATTGAAGTCATCAAAAGAAGCATTGAAAGATTTTGCCCTTGAGGTGGAAATAGTATCCTCATTGAAGCATAAAAACATGGCCCCTCTACTTGGGATTTGCATAGAGGACAATACTTTAATCTCTGTTTATGATTATTTCCCCAAAGGAAGCTTAGAGGAAAATCTACATGGAAAGAACAAGGATGGATCCATCTTGTCATGGGAAGTGAGATTCAATGTAGCTGTTGGGATTGCTGAAGCCCTGGATTACCTACATAGGGAAGCTTTGAAGCCTGTTATACACAGAGATGTCAAGTCTTCAAACATTCTTCTTTCTCATGGATTTGAACCACGATTGTCTGATTTTGGCCTTGCAATATGGGGACCAACAACTTCATCCTTTTTGACACAAGAAGATGTAGTGGGAACATTTGGTTATCTTGCTCCTGAATACTTCATGTATGGAAAAGTCAGTGACAAGATAGATGTCTATGCCTTCGGTGTAGTGCTTCTTGAACTAATATCAGGGAGGGAACCAATCAGTTCTGAACCTTGCAAAGGACAAGAAAGCTTGGTCGTGTGGGTAAGAGCTAACCCCTTTTGGACTATAGAATATAAATCTTTTCTTTTAGTATAA 1650 0.4139 MTVERKFVLVGIRIDSHSRQLLNWALVKVAEPGDCVIAVHVVKSSDYVSKNKSLIDEYLEVYEGLCGVKKVDLTGQILTGNSIRSILVREAKNHAALALVVGGRAATAKYCAKRLPPTTNVLAIKDSRVVFRRCTNKQLPGSLIVDPRPSLTSIESLSERVTQSEFGDSVSMVEREKPTPQNTIDQLKEESFDRLGRCKSRSISMFAGDPTEQKLGWPLLRRANSGISQTRHSRDMSVVQWVMTLPDRSPRKSPQPSSIEENPFQRSISDIEDESSENSSPTSVELPKGLEGMLNIDSLSCKWFSLEVLKSYTNQFSSENLIGKGGSNRVYKGVLPDGKLIAVKVLKSSKEALKDFALEVEIVSSLKHKNMAPLLGICIEDNTLISVYDYFPKGSLEENLHGKNKDGSILSWEVRFNVAVGIAEALDYLHREALKPVIHRDVKSSNILLSHGFEPRLSDFGLAIWGPTTSSFLTQEDVVGTFGYLAPEYFMYGKVSDKIDVYAFGVVLLELISGREPISSEPCKGQESLVVWVRANPFWTIEYKSFLLV. 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g00728 549 SUPERFAMILY Protein kinase-like (PK-like) 298 538 IPR011009 -
Seca5g00728 549 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 8 108 - -
Seca5g00728 549 FunFam probable receptor-like serine/threonine-protein kinase At5g57670 285 390 - -
Seca5g00728 549 MobiDBLite consensus disorder prediction 250 265 - -
Seca5g00728 549 MobiDBLite consensus disorder prediction 246 287 - -
Seca5g00728 549 SMART serkin_6 316 547 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g00728 549 Gene3D Transferase(Phosphotransferase) domain 1 391 542 - -
Seca5g00728 549 PANTHER OS08G0249100 PROTEIN 176 534 IPR046958 -
Seca5g00728 549 Gene3D HUPs 6 114 IPR014729 -
Seca5g00728 549 ProSitePatterns Serine/Threonine protein kinases active-site signature. 437 449 IPR008271 GO:0004672|GO:0006468
Seca5g00728 549 Pfam Protein kinase domain 317 521 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g00728 549 CDD USP_Like 8 104 - -
Seca5g00728 549 Gene3D Phosphorylase Kinase; domain 1 288 390 - -
Seca5g00728 549 ProSiteProfiles Protein kinase domain profile. 316 549 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g00728 Seca-Chr5 18056219 18060948 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g00728 298 540 Receptor kinase-like Gene Family AT5G56890 47.012 1.65e-63 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Seca5g00728 Pkinase 1.7e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g00728 - - lja:Lj0g3v0266219.1 836.639