LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca5g00722	ATGGATAACCTTAATGATATATCTGGTGTTAATTTAACTGATGATACATATGGATATGAGCTTGTTAGTTCTGATGTTAGTGCAAGTGATGAGGCGATTGATGATAGTGATAGTGATAGTGATAGTGATGGTCATGGGGATTTTGATGTTGGCAATGGCAATGAGAGTGAAAATGATATTGCCACTAACCATGATGAACATAAGGGTAACAATAACAAAAACAGGGATCCCTTAATTGATGTAGATGGTGAAAAATTTAAAAGCATTGTAGATTTGACTGAAGAAGATATATTAGGACTTGATTTTGGTACTGAACAAGAAGCCTACGAATTTTATAGAACATATGGAAAATGTATAGGTTTTGCTGTAAGGAAAGATGATGTAAAGAGGGATGTTAGGGGGCAGATTAGAATGCGACAATTTGTCTGCAATAAAGAAGGCAAACGGAACCAAAAACATTTAATGAGGGTTGATAGAAAAAGAGATCACAGGCCGTTGACTCGTACTTCTTGTCCTGCTAAGATTCGTGTTCACTACAATATGAAGACAAACAGATGGAAAGTGGTGTCATTCAAGCAGTCTCATAACCATGAATTATTCCCATCAGTATATAGGCACCTGATCATTGCAAATCGCTGCATTTCGGATGCTGACAAAGCCCAAATTGCTAGCTTGCATGAACATGGGGTAAGAAACTGCCACATAATGGGTTATATGGTAGCTCAAAGAGGGGGATATGGTAATTTGTGTTTTTTGAGAAAGGATGTTTATAATTATCTTGATAGCAAAAATTGTAATCGGATTAAAGGTGGAGACGCTCGTGCAATGTTAAGTTATCTTCAAGGAAAGTCTAATAGTGACCCCATGTTATATTGCAAGTACACAATTGATAAGAAAAATAGATTGAGGTCACTATTTTGGGCAGATGGTGCTTGCGTATCAGACTACCTGTGCTTTGGTGATGTTATTGCCTTTGACACTACCTATAAGAAAAACAGATACCAGCATCCTTTGGTAATTTTCTCAGGGTGTAATCATCATTCTCATATCGTTATTTTTGGCTTTGCATTAGTGCCAGATGAGAGAATTGACACATACAAATGGGTCCTTCAAGCTTTTTCAGAAGCAATGTTCAACAAATAA	1143	0.3675	MDNLNDISGVNLTDDTYGYELVSSDVSASDEAIDDSDSDSDSDGHGDFDVGNGNESENDIATNHDEHKGNNNKNRDPLIDVDGEKFKSIVDLTEEDILGLDFGTEQEAYEFYRTYGKCIGFAVRKDDVKRDVRGQIRMRQFVCNKEGKRNQKHLMRVDRKRDHRPLTRTSCPAKIRVHYNMKTNRWKVVSFKQSHNHELFPSVYRHLIIANRCISDADKAQIASLHEHGVRNCHIMGYMVAQRGGYGNLCFLRKDVYNYLDSKNCNRIKGGDARAMLSYLQGKSNSDPMLYCKYTIDKKNRLRSLFWADGACVSDYLCFGDVIAFDTTYKKNRYQHPLVIFSGCNHHSHIVIFGFALVPDERIDTYKWVLQAFSEAMFNK.	381

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca5g00722	380	Pfam	MULE transposase domain	322	376	IPR018289	-
	Seca5g00722	380	MobiDBLite	consensus disorder prediction	23	79	-	-
	Seca5g00722	380	PANTHER	OS01G0519700 PROTEIN	94	378	-	-
	Seca5g00722	380	MobiDBLite	consensus disorder prediction	59	79	-	-
	Seca5g00722	380	Pfam	FAR1 DNA-binding domain	110	201	IPR004330	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca5g00722	Seca-Chr5	17848888	17850030	Transposed

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	FAR1	Seca5g00722		FAR1	5e-22	CL0274

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca5g00722	-		-	ccaj:109792835	411.379