LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca5g00714	ATGCCTTACCTTGTCCGCGAAAACCTATTCATCGGCAATATCGGCGACGCGGCGGAGATTCTCCAAAACGACACCGTTCAGCACCGTGTGACGCACATCCTCTCCGTTCTCAGCTCCGCTTCCATCTCCTTCTTCTCCGAATGGCGAACCGGCCTATCAATCCCCGCCAAGGAGATCGCCAAGGTCCACGCCGGTGAAGTCGCCGCCAAGAGCGCGCTCTTGCCGGAGAAGCTCCTCTACTCGCTCGAGTACGCCGGCAATGACTTGAAGCTCGTGAGGATGGCCGTTCCTCTCAAGGACACCGAGAACGAGGATTTGTTGGATTACCTCGAAGTTTGCATCGATTTCATTGATCGTAGCAGGAAGGAAGGAGGTTCCGTTTTGGTGCACTGTTTCGCCGGAGTTTCCAGAAGTGCGGCGGTTATTACTGCGTATTTGATGAGAACCGAACGTCTATCACAAGAAGATGCCCTTGAATCGTTGAGGCAGAGCTGTGAATTTGTTTGCCCGAATGATGGTTTTCTAGAGCAGTTGAAAATGTTTGAGGAGATGGGTTACAAGGTTGATCAATCTAGCCCTTTATACAAGCGCTTTCGTCTAAAAATATTAGGTGAGAATCATTTCTCAGGGTTGAGGATAGACAGTTCTAAACTTGGGGCAGATCCTGGCATGCCTGTTGAAATTTCTTCAGAGGTGCAAGAAGCTACTAAAGTAGAAAGTAATAATCGTCGCCCTACATATCGCTGTAAGAAGTGCCGACGGATTGTTGCATTGCAAGAACATGTGGTAGATCATATTCCTGGTGAGGGTGAGACATCCTTTGGGTGGCATAAGCGGAGAAGTGGTAACCCTTTTAACAAGTCTAATGAATCTGAGTGTTCATCCATATTTATTGAGCCTCTGCGATGGATGAAAGCTGTTGAGGAAGGTGCGTTGGAGGGAAAGCTGTCTTGTGCTCATTGTGATGCCCGTTTGGGATACTTCAATTGGGCAGGCATACAGTGCAGCTGCGGAAGCTGGATAACCCCAGCATTTCAACTGCATAAAAGCCGGGTAGATATAAGCCCTGTGTAA	1074	0.4879	MPYLVRENLFIGNIGDAAEILQNDTVQHRVTHILSVLSSASISFFSEWRTGLSIPAKEIAKVHAGEVAAKSALLPEKLLYSLEYAGNDLKLVRMAVPLKDTENEDLLDYLEVCIDFIDRSRKEGGSVLVHCFAGVSRSAAVITAYLMRTERLSQEDALESLRQSCEFVCPNDGFLEQLKMFEEMGYKVDQSSPLYKRFRLKILGENHFSGLRIDSSKLGADPGMPVEISSEVQEATKVESNNRRPTYRCKKCRRIVALQEHVVDHIPGEGETSFGWHKRRSGNPFNKSNESECSSIFIEPLRWMKAVEEGALEGKLSCAHCDARLGYFNWAGIQCSCGSWITPAFQLHKSRVDISPV.	358

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca5g00714	357	CDD	DSP_DUSP12	4	189	-	-
	Seca5g00714	357	FunFam	Dual specificity protein phosphatase 12-like	4	204	-	-
	Seca5g00714	357	PANTHER	DUAL SPECIFICITY PROTEIN PHOSPHATASE 12 FAMILY MEMBER	1	353	-	-
	Seca5g00714	357	SUPERFAMILY	(Phosphotyrosine protein) phosphatases II	4	187	IPR029021	-
	Seca5g00714	357	SMART	dsp_5	1	184	IPR020422	GO:0006470\|GO:0008138
	Seca5g00714	357	ProSiteProfiles	Dual specificity protein phosphatase domain profile.	1	187	IPR020422	GO:0006470\|GO:0008138
	Seca5g00714	357	Pfam	Dual specificity phosphatase, catalytic domain	91	183	IPR000340	GO:0008138\|GO:0016311
	Seca5g00714	357	ProSiteProfiles	Tyrosine specific protein phosphatases domain profile.	107	163	IPR000387	GO:0016311\|GO:0016791
	Seca5g00714	357	PIRSF	DUSP12	3	47	IPR016278	GO:0006470\|GO:0008138
	Seca5g00714	357	PIRSF	DUSP12	82	357	IPR016278	GO:0006470\|GO:0008138
	Seca5g00714	357	Gene3D	Protein tyrosine phosphatase superfamily	4	204	IPR029021	-
	Seca5g00714	357	ProSitePatterns	Tyrosine specific protein phosphatases active site.	129	139	IPR016130	GO:0016311\|GO:0016791

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca5g00714	Seca-Chr5	17555666	17558540	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca5g00714	91	183	Protein tyrosine phosphatase (PTP) family	AT3G06110	38.710	1.48e-17	77.4

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca5g00714	K14819		-	gmx:100804683	613.994