Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g00703 ATGGGAAGGTCTCCTTGTTGTGAAAAAGCTCACACAAACAAAGGTGCATGGACCAAAGAAGAAGATGATAGGCTTATATCTTATATTAGAGCTCATGGTGAGGGTTGCTGGCGTTCTCTCCCTAAAGCTGCAGGGCTTCTCCGATGTGGCAAAAGCTGCCGTCTCCGGTGGATCAACTACCTCCGTCCAGACCTCAAACGTGGAAACTTCACTGAAGAAGAAGATGAACTCATCATCAAACTCCATAGTCTCCTTGGTAACAAGTGGTCTTTGATAGCTGGAAGATTGCCAGGGAGAACAGACAATGAGATAAAGAATTACTGGAACACTCATATAAGAAGGAAGCTTTTGAACAGAGGAATTGACCCTGCAACTCATAGGCCTCTAAATGAGCCTCAAAATCAAGAATCTGTTGTTTCTGCTATTAATGCTACTACTACTTCTTCTTCTTCTGCAGTAGTAGTACCAATAACCACTATTTCTTTTGCTCCAAAACAAGAACAACAAGAGACAAGTACAAGTAACCCAACCATGGTTAAAGGGTCAATCATAGAACGTTGCCCTGACTTGAATCTTGAGCTAACAATTAGTCCTCCACGTCAGCAAGAGGTTCCTGATCATCAACAATCCTTCAAGAACATGGAGAGAAGTAGTCTCTGCTTTGTTTGCAGTTTGGGTTTGCAGAATAGCAAGGATTGTAGCTGTGGGATTGGAAACACAAGCAGTGGGAACAACAACACTGCTTCTTCTGCTTCTGCTGCATATGATTTCTTGGGCTTGAAAACAGGTGTTTGGGATTATAAGAGATTGGAAATGAAATGA 822 0.4234 MGRSPCCEKAHTNKGAWTKEEDDRLISYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLLNRGIDPATHRPLNEPQNQESVVSAINATTTSSSSAVVVPITTISFAPKQEQQETSTSNPTMVKGSIIERCPDLNLELTISPPRQQEVPDHQQSFKNMERSSLCFVCSLGLQNSKDCSCGIGNTSSGNNNTASSASAAYDFLGLKTGVWDYKRLEMK. 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g00703 273 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Seca5g00703 273 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Seca5g00703 273 CDD SANT 69 112 IPR001005 -
Seca5g00703 273 CDD SANT 16 61 IPR001005 -
Seca5g00703 273 SMART sant 66 114 IPR001005 -
Seca5g00703 273 SMART sant 13 63 IPR001005 -
Seca5g00703 273 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 200 - -
Seca5g00703 273 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Seca5g00703 273 FunFam Myb transcription factor 68 137 - -
Seca5g00703 273 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Seca5g00703 273 FunFam MYB-related transcription factor 13 66 - -
Seca5g00703 273 Gene3D - 14 66 - -
Seca5g00703 273 Gene3D - 69 141 - -
Seca5g00703 273 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Seca5g00703 273 SUPERFAMILY Homeodomain-like 13 108 IPR009057 -
Seca5g00703 273 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g00703 Seca-Chr5 17372084 17373392 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g00703 1 273 MYB Transcription Factor Family AT4G38620 59.028 2.64e-112 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca5g00703 Myb_DNA-binding 2.2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g00703 K09422 - gmx:780553 395.586