Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g00700 ATGGCATTCTACAGTAAGTTTGGAAACCTCTTGAGACAGAGTGCTCCTCAGAGCAGACACGTACCTGTTGCATCCATGCTTAATTACATTCGTTGCATGTATTCATCCAAGCTTTTCATTGGAGGCCTTTCATATGGAGTCGATGACCAGTCTCTTAGGGATGCATTTGCAAGCTTTGGAGATGTGGTTGAAGCAAGGGTTATCATCGATAAAGACACTGTAAGATCAAGGGGATTTGGATTTGTTAACTTCTCCACTAATGAGTCAGCAAGTTCAACACTATCTGCCATGGATGGACAGAGGCGAAACACTCGGGTGTCCTATGCAAATAATAGACCTTCTGGACCTCGATCTCCTAGTGGTGCTTATGTTGGATGTTCAATTGGTGGTGTTGAGACAGCAACCTATGGAGGGCCCACTCAAAGCCCAACTGGAATATCACAACAACAACCTATGGAATGCGAGTTGCAGTGTTTGGTGCTGAGATGGATCCAATTTAAGGAACAAGTTGATGGATTATGCAAACTTCTAACAACTTGGATTATTATCTTGCTGGTTTTTAATCATTTCTTCATTGATTTTAGTTTCTTCTCTTGGTTTCAAGTTGGTATTGGTTGA 618 0.4191 MAFYSKFGNLLRQSAPQSRHVPVASMLNYIRCMYSSKLFIGGLSYGVDDQSLRDAFASFGDVVEARVIIDKDTVRSRGFGFVNFSTNESASSTLSAMDGQRRNTRVSYANNRPSGPRSPSGAYVGCSIGGVETATYGGPTQSPTGISQQQPMECELQCLVLRWIQFKEQVDGLCKLLTTWIIILLVFNHFFIDFSFFSWFQVGIG. 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g00700 205 Gene3D - 31 141 IPR012677 -
Seca5g00700 205 PANTHER GEO13361P1-RELATED 24 134 - -
Seca5g00700 205 SUPERFAMILY RNA-binding domain, RBD 35 122 IPR035979 GO:0003676
Seca5g00700 205 SMART rrm1_1 37 110 IPR000504 GO:0003723
Seca5g00700 205 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 38 105 IPR000504 GO:0003723
Seca5g00700 205 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 36 111 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g00700 Seca-Chr5 17268914 17269531 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g00700 9 95 C2H2 Transcription Factor Family AT2G19380 31.034 3.57e-10 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g00700 - - gmx:100499841 177.178