Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g00698 ATGCAGCCTCTCCTCCTCTACGCGCGATGTACGTCTTCCGTGAGCAGCGCCGTTCACCGTTGCGGCCCTAGCTTCGCTCGTGCCTCCACGCCAATTCGATCCACCAAGCTCACAGTTGCATGGCTACATCCCCTGTTGCGTTGTCGTGACCATGGTGAAGATCCAGCACTGATTTTATACACTAGTGGAACAACAGGTAAACCTAAGGGAGTTGTTCATACTTCGATTTTGGGTACTTCAGGAGTAACAAGAGATGGATTGAGCAGACACTTTTTCCATAGACCTTCAAAGGCATACACAACAGGGACAAGGAAGAGGAGAAAGATTCAAAATGAATGTGACTTGCAAGGAGGAGAAACCAGATGGCACAAGACTGGTAAGACAAGGCCAGTGATGGTGAATAAGAAACAAAAAGGTTGCAAGAAGATTCTTGTGCTGTACACCAATTTTTGA 453 0.4724 MQPLLLYARCTSSVSSAVHRCGPSFARASTPIRSTKLTVAWLHPLLRCRDHGEDPALILYTSGTTGKPKGVVHTSILGTSGVTRDGLSRHFFHRPSKAYTTGTRKRRKIQNECDLQGGETRWHKTGKTRPVMVNKKQKGCKKILVLYTNF. 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g00698 150 Gene3D NAC domain 69 149 IPR036093 GO:0003677|GO:0006355
Seca5g00698 150 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 79 150 IPR044799 GO:0003700
Seca5g00698 150 SUPERFAMILY Acetyl-CoA synthetase-like 41 74 - -
Seca5g00698 150 PRINTS AMP-binding signature 53 64 IPR020459 -
Seca5g00698 150 PRINTS AMP-binding signature 65 73 IPR020459 -
Seca5g00698 150 Pfam No apical meristem (NAM) protein 84 148 IPR003441 GO:0003677|GO:0006355
Seca5g00698 150 Pfam AMP-binding enzyme 50 74 IPR000873 -
Seca5g00698 150 SUPERFAMILY NAC domain 83 148 IPR036093 GO:0003677|GO:0006355
Seca5g00698 150 ProSitePatterns Putative AMP-binding domain signature. 58 69 IPR020845 -
Seca5g00698 150 Gene3D - 6 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g00698 Seca-Chr5 17256074 17257225 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g00698 64 150 NAC Transcription Factor Family AT5G56620 64.835 1.82e-32 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g00698 - - gmx:100799291 150.984