LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca5g00690	ATGACTGGGATTTTTTTATCTGCAGAAAATTTTAGAGCTTTGTGCACAGGGGAGCAAGGAGAGAGTGCAAGTGGTATAAAACTTCATTACAAAGGGACACCATTCCATCGGATAATATCTGGTTTCGTAATTCAGGGTGGAGATATTGTTCATCATGATGGCAAAGCATCTGAATCTATTTATGGTGGCACCTTTCCTGATGAGAACTTCAAAATTAAACATTCTCATGCTGGCGTTGTCTCTATGGCAAATTCAGGGCCTGATTCCAATGGCTCACAGTTTTTCATTACCACAGTGAAGGCCAGTTGGTTGGATGGAGAACATGTTGTATTTGGCAAGGTTGTTCAAGGCATGGATATTGTGTTTGCAATTGAAGGGGGAGCTGGAACCTACAGTGGAAAACCCAGAAAGAAGGTAGTGATTGCAGACTCTGGAGAGATACCCAAGAGCCGGTGGGATGAGGAAAATTGA	471	0.4268	MTGIFLSAENFRALCTGEQGESASGIKLHYKGTPFHRIISGFVIQGGDIVHHDGKASESIYGGTFPDENFKIKHSHAGVVSMANSGPDSNGSQFFITTVKASWLDGEHVVFGKVVQGMDIVFAIEGGAGTYSGKPRKKVVIADSGEIPKSRWDEEN.	157

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca5g00690	156	PIRSF	Peptidylpro_ismrse	4	151	IPR024936	GO:0003755
	Seca5g00690	156	PRINTS	Cyclophilin peptidyl-prolyl cis-trans isomerase signature	93	105	IPR002130	GO:0000413\|GO:0003755
	Seca5g00690	156	PRINTS	Cyclophilin peptidyl-prolyl cis-trans isomerase signature	106	121	IPR002130	GO:0000413\|GO:0003755
	Seca5g00690	156	PRINTS	Cyclophilin peptidyl-prolyl cis-trans isomerase signature	78	93	IPR002130	GO:0000413\|GO:0003755
	Seca5g00690	156	PRINTS	Cyclophilin peptidyl-prolyl cis-trans isomerase signature	35	47	IPR002130	GO:0000413\|GO:0003755
	Seca5g00690	156	SUPERFAMILY	Cyclophilin-like	7	147	IPR029000	-
	Seca5g00690	156	Gene3D	-	5	153	IPR029000	-
	Seca5g00690	156	Pfam	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD	7	144	IPR002130	GO:0000413\|GO:0003755
	Seca5g00690	156	FunFam	Peptidyl-prolyl cis-trans isomerase CYP19-2	3	147	-	-
	Seca5g00690	156	ProSiteProfiles	Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile.	7	146	IPR002130	GO:0000413\|GO:0003755
	Seca5g00690	156	PANTHER	PEPTIDYL-PROLYL CIS-TRANS ISOMERASE	7	147	-	-
	Seca5g00690	156	ProSitePatterns	Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature.	30	47	IPR020892	GO:0003755\|GO:0006457

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca5g00690	Seca-Chr5	16973166	16974726	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca5g00690	7	144	U-box Gene Family	AT5G67530	44.604	4.55e-25	98.2

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca5g00690	-		-	gmx:100808983	288.5