Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g00676 ATGAGTTCGAGATTGACTGGGAAGGTGAAATGGTTCAACGATCAGAAGGGTTTCGGGTTCATTACCCCTGATGATGGTAGCGAAGAACTCTTTGTTCACCAATCTCAGATTAAAACCCAAGGGTTTCGTAGCCTTGCTGAAGGAGAGTCCGTTGAGTTTCTCATCGACTCTGACCCTGACGGCCGCTCCAAAGCCGTCGATGTCACCGGTCCTGATGGTGCTGATGTCCAGGGAAGCCGACGCGGTGGTGGTGGTGGCGGATTTGGCGGTGGTGGTGGCGGATACGGCGGTGGAGGCGGATACGGTGGTGGAGGCGGCTACGGCGGTGGAGGAAGCAGGGGCTACGGCGGTGGAAGGGGATCTGGCTATGGCGGCGGTGGTAGAGGTGGCGGAAGAGGAGGTGGTGGTGGCGGCGGCGCTTGTTATAACTGTGGTGAGTCAGGTCACATGGCTAGGGACTGCTACCAGGGTGGCAGCGGCGGAGGTGGCGGTGGAGGAAGGTACGGCGGTGGTGGTGGAGGTGGTGGCGGCGGGAGCTGCTTCAGTTGTGGAGAATCTGGGCATTTCGCGAGAGATTGCCCAGCAAGTGCTCGTTGA 597 0.5963 MSSRLTGKVKWFNDQKGFGFITPDDGSEELFVHQSQIKTQGFRSLAEGESVEFLIDSDPDGRSKAVDVTGPDGADVQGSRRGGGGGGFGGGGGGYGGGGGYGGGGGYGGGGSRGYGGGRGSGYGGGGRGGGRGGGGGGGACYNCGESGHMARDCYQGGSGGGGGGGRYGGGGGGGGGGSCFSCGESGHFARDCPASAR. 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g00676 198 Pfam 'Cold-shock' DNA-binding domain 6 70 IPR002059 GO:0003676
Seca5g00676 198 Pfam Zinc knuckle 179 194 IPR001878 GO:0003676|GO:0008270
Seca5g00676 198 Pfam Zinc knuckle 140 154 IPR001878 GO:0003676|GO:0008270
Seca5g00676 198 SUPERFAMILY Nucleic acid-binding proteins 3 70 IPR012340 -
Seca5g00676 198 PANTHER COLD SHOCK DOMAIN PROTEIN 2 111 195 - -
Seca5g00676 198 SMART csp_8 6 71 IPR011129 GO:0003676
Seca5g00676 198 CDD CSP_CDS 6 70 IPR002059 GO:0003676
Seca5g00676 198 ProSitePatterns Cold-shock (CSD) domain signature. 18 37 IPR019844 -
Seca5g00676 198 Gene3D - 175 198 - -
Seca5g00676 198 Gene3D - 133 163 - -
Seca5g00676 198 Gene3D - 1 82 IPR012340 -
Seca5g00676 198 ProSiteProfiles Cold-shock (CSD) domain profile. 4 70 IPR002059 GO:0003676
Seca5g00676 198 MobiDBLite consensus disorder prediction 56 85 - -
Seca5g00676 198 ProSiteProfiles Zinc finger CCHC-type profile. 141 154 IPR001878 GO:0003676|GO:0008270
Seca5g00676 198 PRINTS Cold shock protein signature 28 37 IPR002059 GO:0003676
Seca5g00676 198 PRINTS Cold shock protein signature 43 61 IPR002059 GO:0003676
Seca5g00676 198 PRINTS Cold shock protein signature 7 22 IPR002059 GO:0003676
Seca5g00676 198 SUPERFAMILY Retrovirus zinc finger-like domains 131 196 IPR036875 GO:0003676|GO:0008270
Seca5g00676 198 ProSiteProfiles Zinc finger CCHC-type profile. 180 194 IPR001878 GO:0003676|GO:0008270
Seca5g00676 198 SMART c2hcfinal6 140 156 IPR001878 GO:0003676|GO:0008270
Seca5g00676 198 SMART c2hcfinal6 179 195 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g00676 Seca-Chr5 16359392 16359988 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Seca5g00676 CSD 6.8e-26 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g00676 - - mnt:21407697 167.548