Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g00674 ATGGCTATAGGTAGCACATTGGGAATTCTGTTTTGGATTTTCTTAAACAAAATTCATGAATTAATAGCTTCTCCTCGCTCACATGTGATTGAGAGGAGAGAATCTCGATTTGTGGCTACAAGTGTAAGTGTTCATGAGAGGGATGGGGAAGGTGCACCATTTGTGGCTACAATTGTAAGGGCAGAGAGGGAACCATATAGGGTTAGAGATGGGGAAGGTGTATCGTTATATCCTTTTGATCGAAGAGCTGGACTTGCTAGGTTAGCAATGAGAGCCTTGCCTCCTATTAAAATCTTTAGAGGAGAAGACACTAATATGGAATCACAATGTGATTGTCCTATTTGCAAGGAAGAATTCAAGAATGGGGAGTTGATTCAACCTTTTAGAGTGTGCCTACATGAATTCCATTCCTCTTGCATTAACTCTTGGTTACATGGTGGAAACATTACTTGTCCCGTTTGCCGTAGGAATTTGCTCGCAACTAATCTTTCCTTAAGGTACGAATGA 507 0.4083 MAIGSTLGILFWIFLNKIHELIASPRSHVIERRESRFVATSVSVHERDGEGAPFVATIVRAEREPYRVRDGEGVSLYPFDRRAGLARLAMRALPPIKIFRGEDTNMESQCDCPICKEEFKNGELIQPFRVCLHEFHSSCINSWLHGGNITCPVCRRNLLATNLSLRYE. 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g00674 168 Pfam Zinc finger, C3HC4 type (RING finger) 112 154 - -
Seca5g00674 168 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 57 156 - -
Seca5g00674 168 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 79 160 IPR013083 -
Seca5g00674 168 ProSiteProfiles Zinc finger RING-type profile. 112 155 IPR001841 -
Seca5g00674 168 SUPERFAMILY RING/U-box 111 159 - -
Seca5g00674 168 SMART ring_2 112 154 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g00674 Seca-Chr5 16303633 16304139 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g00674 78 165 C3H Transcription Factor Family AT2G27940 35.227 7.89e-13 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g00674 - K19041 aprc:113865236 127.487