Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g00669 ATGGCTGCTGCTTCTCTCTATGAGGTGCTTGGAATTTCAATCGGAGCAAGCTGCCCTGAAATAAAGGCAGCTTACAGAAAGCTGGCAAGAACATGCCACCCTGATGTTGTGGCCATGAATCAGAAGGAAAGCTCAGCTAACCAGTTCATGATGGTCCATTTAGCTTATTCAACATTGTCTGACCCAGATAAGCGTGCTCAATATGACAGAGAAATCTATGGACACAGAAGATCCGCAAACATGTCAAGAAGAAATCAGTCATTTTATTCTCATGCTGGAAGGAAATGGGAAACGGACCAATGTTGGTAG 309 0.4401 MAAASLYEVLGISIGASCPEIKAAYRKLARTCHPDVVAMNQKESSANQFMMVHLAYSTLSDPDKRAQYDREIYGHRRSANMSRRNQSFYSHAGRKWETDQCW. 103
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Seca5g00669 102 Pfam DnaJ domain 6 69 IPR001623 -
Seca5g00669 102 ProSiteProfiles dnaJ domain profile. 5 72 IPR001623 -
Seca5g00669 102 ProSitePatterns Nt-dnaJ domain signature. 49 68 IPR018253 -
Seca5g00669 102 SMART dnaj_3 4 64 IPR001623 -
Seca5g00669 102 PRINTS DnaJ domain signature 44 64 IPR001623 -
Seca5g00669 102 PRINTS DnaJ domain signature 25 40 IPR001623 -
Seca5g00669 102 PRINTS DnaJ domain signature 7 25 IPR001623 -
Seca5g00669 102 PRINTS DnaJ domain signature 64 83 IPR001623 -
Seca5g00669 102 PANTHER DNAJ DOMAIN (PROKARYOTIC HEAT SHOCK PROTEIN)-RELATED 3 98 - -
Seca5g00669 102 Gene3D DnaJ domain 1 96 IPR036869 -
Seca5g00669 102 CDD DnaJ 7 61 IPR001623 -
Seca5g00669 102 SUPERFAMILY Chaperone J-domain 3 75 IPR036869 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Seca5g00669 Seca-Chr5 16170545 16170853 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g00669 7 69 C2H2 Transcription Factor Family AT1G74250 46.269 1.27e-10 54.7
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g00669 - - gmx:100305807 171.014