Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g00659 ATGCTATCACATCAGTCGATTATTGGAAAAAAGCAAATATATTATGATAAACATGATGACGAGACACTCATATACAGTGATAGCGATAAGGAATCGACAAAGTCTGACGATGTTAAACGTGACTTTAGTGTGACTGAAGATCAAATTTTGTGGATGGCATTTGAGGAACATGGCTTCACTGAGGAAGTGTTCAATATAGTTTCAAAGTTTGTCAATGGTACCGTTTTAGAAATTCAAGAGAGGTATAAATTTCTCAAAGAAAAGAATACGAGGAGTTTAGACCAACATTCTGAAGATTTTGAAGAACATGATTCTCTTATTGGCATATCTTTGGATAAAAGCTTGAATGATGCTTTGACTACTTTTGATAGCCTTTTCTGTCGGCAGTGCATTCAAATCTTTGATTGTCCTCTGCATGGTTGTTCACAACCTATATATCCTTGTGAAAAGCAGAAAGTATGGTCTGAACCTGAAGGTGACAGGAAACCATGTTGTGATAATTGTTACCTTTGGAAACCTATGGAAGTGCAAGTTGATGGGAAGATAAGTTTCTCAAATTGGAAACCTCTGGAAAAAGATTTATATCTGAAAGGAGTAGAAATATTTGGGAGAAACAGGACCGAGAGATTGCATCAGGGTCATGGGTACAACAAAAAAAGCACAAAATTAGGAAGTTTAAATATTCATCCAAGTTTGCTGGCCTCCCATCTACATGGAAAAGAAATATTGCTGGGAAATTTGAAACTTACAAGCAGTATACACCTTGTGTATGTCAGGAAATGTGTGGGAAACAATGTCCTTGTCTTCATAATGGATCTTGCTGTGAAAAATATTGTGGGTGTTCAAAGCTCTGCCAAAATCGGTTTAGAGGATGTTACTGTGCTAAAAGTCAATGTAGAAGTCAACAATGTCCATGCTTTGCAGCAGAACGAGAATGTGACCCAGATTTGTGGCGGTGGTCCATTAGGAGAGCCACCTCGCCATGGAGATGGTCAATGTGGAAATATGAGGCTTCTTTTAAGGCAAAACCAAAGGATTCTATTAGCAAAGTCTGATGTTGAAGGATGGGGAGCCTTCTTAAAGAACCCAGCTAACGAAAATGATTACTTGGGAGAGTTCACGGGTGAATTGATCTCTCATTTAGAAGCAGAAAAGCGTGGGAAAATGTATGATCGTGCAAACTCCTCTTTCCTTTTTAACTTGAATGATCAGTACGTTCTTGATGCTAATCGCAAGGGAAACAAGTTGAAATTTGCTAACCACTCAAAAAAACCTAACTGTTATGCAAGGATTATGCTTGTTGGAGGGGATCATCGAGTAGGGATATTTGCCAAGGAACGCATTGAAGCTGGTGAGGAGCTTTTCTTAGATTATTGCTATAGTCCAGAGCAAGCACCAGCATGGTATTAA 1410 0.3858 MLSHQSIIGKKQIYYDKHDDETLIYSDSDKESTKSDDVKRDFSVTEDQILWMAFEEHGFTEEVFNIVSKFVNGTVLEIQERYKFLKEKNTRSLDQHSEDFEEHDSLIGISLDKSLNDALTTFDSLFCRQCIQIFDCPLHGCSQPIYPCEKQKVWSEPEGDRKPCCDNCYLWKPMEVQVDGKISFSNWKPLEKDLYLKGVEIFGRNRTERLHQGHGYNKKSTKLGSLNIHPSLLASHLHGKEILLGNLKLTSSIHLVYVRKCVGNNVLVFIMDLAVKNIVGVQSSAKIGLEDVTVLKVNVEVNNVHALQQNENVTQICGGGPLGEPPRHGDGQCGNMRLLLRQNQRILLAKSDVEGWGAFLKNPANENDYLGEFTGELISHLEAEKRGKMYDRANSSFLFNLNDQYVLDANRKGNKLKFANHSKKPNCYARIMLVGGDHRVGIFAKERIEAGEELFLDYCYSPEQAPAWY. 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g00659 469 ProSiteProfiles SET domain profile. 344 459 IPR001214 GO:0005515
Seca5g00659 469 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE E(Z) 325 463 IPR045318 GO:0006338|GO:0042054
Seca5g00659 469 CDD SET_EZH 344 460 - -
Seca5g00659 469 SMART set_7 344 465 IPR001214 GO:0005515
Seca5g00659 469 Pfam SET domain 365 458 IPR001214 GO:0005515
Seca5g00659 469 SUPERFAMILY SET domain 330 462 IPR046341 -
Seca5g00659 469 Gene3D SET domain 293 461 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g00659 Seca-Chr5 15868507 15872138 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g00659 333 462 C2H2 Transcription Factor Family AT2G23740 27.211 6.80e-09 56.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Seca5g00659 SET 2e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g00659 - - twl:120000074 261.151