Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g00658 ATGCTAGCACATCAGTCGATTATTGGAAAAAAGCAAATATATTATGATAAACATGATGACGAGACACTCATATACAGTGATAACGATAAGGAATCGACAAATTCTGACGATGTTAAACGTGACTTTAGTGTGACTGAAGATCAAATTTTGTGGATGGCATTTGAGGAACATGGCTTCACTGAGGAAGTGTTCAATATAGTTTCAAAGTTTGTCAATGGTACCGTTTTAGAAATTCAGGAGAGGTATAAATTTCTCAAAGAAAAGAATACGAGGAGTTTAGACCAACATTCTGAAGATTTTGAAGAACATGATTCTCTTATTGGCATATCTTTGGATAAAAGCTTGAATGATGCTTTGACTACTTTTGATAGCCTTTTCTGTCGGCAGTGCATTCAAATCTTTGATTGTCCTCTGCATGGTTGTTCACAACCTATATATCCTTGTGAAAAGCAGAAAGTATGGTCTGAACCTGAAGGTGACAGGAAACCATGTTGTGATAATTCTTACATTTGGAAACCTATGGAAGTGCAAGTTGATGGGAAGATAAGTTTCTCAAATTGGAAACCTCTGGAAAAAGATTTATATCTGAAAGGAGTAGAAATATTTGGGAGAAACAGTTGCCTTATAGCACGAAACTTACTTTCTAGCTTGAAGACCTGCATGGAAGTAGCTAGCTACATGTATGCCGAAGAAGTGTCAGTGCTTGATAGTTCAATCATTAACAAAAGTGGACAAATTGATGCAGAGTTAGAAACTTTGATCAACCATTACTATTATGCCAGGACCGAGAGATTGCATCAGGGTCATGGGTACAACAAAAAAAGCACAAAATTAGGAAGTTTAAATATTCATCCAAGTTTGCTGGCCTCCCATCTACATGGAAAAGAAATACTGCTGGGAAATTTGAAACTTACAAGCAGTATACACCTTGTGTATGTCAGGAAATGTGTGGGAAACAATGTCCTTGTCTTCATAATGGATCTTGCTGTGAAAAATATTGTGGGTGTTCAAAGCTCTGCCAAAATCGGTTTAGAGGATGTTACTGTGCTAAAAGTCAATGTAGAAGTCAACAATGTCCATGCTTTGCAGCAGAACGAGAATGTGACCCAGATTTGTGGCGGTGGTCCATTAGGAGAGCCACCTCGCCATGGAGATGGTCAATGTGGAAATATGAGGCTTCTTTTAAGGCAAAACCAAAGGATTCTATTAGCAAAGTCTGATGTTGAAGGATGGGGAGCCTTCTTAAAGAACCCAGCTAACGAAAATGATTACTTGGGAGAGTTCACGGGTGAATTGATCTCTCATTTAGAAGCAGAAAAGCGTGGGAAAATGTATGATCGTGCAAACTCCTCTTTCCTTTTTAACTTGAATGATCAGTACGTTCTTGATGCTAATCGCAAGGGAAACAAGTTGAAATTTGCTAACCACTCAAAAAAACCTAACTGTTATGCAAGGATTATGCTTGTTGGAGGGGATCATCGAGTAGGGATATTTGCCAAGGAACGCATTGAAGCTGGTGAGGAGCTTTTCTTAGATTATTGCTATAGTCCAGAGCAAGCACCAGCATGGTATTAA 1575 0.3854 MLAHQSIIGKKQIYYDKHDDETLIYSDNDKESTNSDDVKRDFSVTEDQILWMAFEEHGFTEEVFNIVSKFVNGTVLEIQERYKFLKEKNTRSLDQHSEDFEEHDSLIGISLDKSLNDALTTFDSLFCRQCIQIFDCPLHGCSQPIYPCEKQKVWSEPEGDRKPCCDNSYIWKPMEVQVDGKISFSNWKPLEKDLYLKGVEIFGRNSCLIARNLLSSLKTCMEVASYMYAEEVSVLDSSIINKSGQIDAELETLINHYYYARTERLHQGHGYNKKSTKLGSLNIHPSLLASHLHGKEILLGNLKLTSSIHLVYVRKCVGNNVLVFIMDLAVKNIVGVQSSAKIGLEDVTVLKVNVEVNNVHALQQNENVTQICGGGPLGEPPRHGDGQCGNMRLLLRQNQRILLAKSDVEGWGAFLKNPANENDYLGEFTGELISHLEAEKRGKMYDRANSSFLFNLNDQYVLDANRKGNKLKFANHSKKPNCYARIMLVGGDHRVGIFAKERIEAGEELFLDYCYSPEQAPAWY. 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g00658 524 SMART set_7 399 520 IPR001214 GO:0005515
Seca5g00658 524 SUPERFAMILY SET domain 385 517 IPR046341 -
Seca5g00658 524 ProSiteProfiles SET domain profile. 399 514 IPR001214 GO:0005515
Seca5g00658 524 Gene3D SET domain 348 516 IPR046341 -
Seca5g00658 524 CDD SET_EZH 399 515 - -
Seca5g00658 524 Pfam SET domain 420 513 IPR001214 GO:0005515
Seca5g00658 524 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE E(Z) 185 274 IPR045318 GO:0006338|GO:0042054
Seca5g00658 524 SMART sant 183 233 IPR001005 -
Seca5g00658 524 SMART sant 38 88 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g00658 Seca-Chr5 15833383 15837012 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g00658 388 517 C2H2 Transcription Factor Family AT2G23740 27.211 1.21e-08 56.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Seca5g00658 SET 2.4e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g00658 - K11430 sspl:121811640 400.593