Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g00657 ATGGCGGCTACTGTATCTGCGTGGTCTAAACCCGGGGCTTGGGCTCTGGATTCCGAGGAACACGAAGCTGAACTCCTTCAACAGAACCACCACGAAGAAACCACCAAGCCACTCGCCGACTACCCTTCCCTCGCCGTCGCCGCCGCCACTAAACCCAAGAAGAAGAAAGGCCAAACCGTTCCTTTGGCCGTCTTCAACGCCAACCCCGACGCCGCCTTCACTCAACACTACCAAGATCCCGTCGACCTCCCCACCGGTCCTCGCCAGCGAACCGCCGAGGAACTCGCCTCCGACCGGAATCGCCTCGGTGGCGGCTTTAGGTCATACGGTGACCGCCCCCATCGGAATTCCGGCGGCGACGAGTCTTCCAATTCCAGATGGGGTTCTTCTAGGGTTTCTGATGAACCTAGGCGAAACGGTTCGTTTGGGTCTAGGGATTCGAATCGCGAGTTGGCACCGTCACGTGCCGATGAAATTGATAATTGGGCTGCTGCCAAGAAATCGACTGGGAATGGGTTCGAGAGGAGGGAGAGGGAAAGGGATAGAGGTGGATTCTTCGATTCACAGTCGCGTGCTGATGAATCGGACAGTTGGGTTTCCAGTAAGAACTTTGTGCCGTCGGAGGGGGGGAGATTTGGTTCCGGCGGCGGCGGTGGGTTTGAGAGAGAGAGGAAAGTAGGGTTTGGTACCAGCGGTGGTGCTGATTCGGATAATTGGAACAAGAAGAAGGGTGAAATTAGCGTTGGGAGTGAAAGAACTGAGAGTGGTTTTGGTGGAAGGCCAAGGCTTGTGTTGCAACCTAGGTCACAATCAGTGAGTAATGAAAAAGAGGAAAGTGCTTCTGGGAATGTGGCAAAACCTAAGGGTTCAAATCCATTTGGAGAGGCAAGGCCTAGGGAGCAGGTTTTGGCTGAGAAAGGACAGGATTGGAAGAAGATTGATGAGCAACTTGAGAGCATGAAGATTAAGGAGACAGTAGCGGTGGATGCGGTTGGGAAGAGGGGTTTTGGGTCTGGTAATGGACGTGCTAGTTTGCCAGAAGATAGGACTGAGAGGAGTTGGAGGAAGGCCCTATCTGATGATGGTCGTCCAAAAAGTGCTGAGAAAGTGGAGGATGTACACGTTGAAGAAAACTGA 1137 0.5347 MAATVSAWSKPGAWALDSEEHEAELLQQNHHEETTKPLADYPSLAVAAATKPKKKKGQTVPLAVFNANPDAAFTQHYQDPVDLPTGPRQRTAEELASDRNRLGGGFRSYGDRPHRNSGGDESSNSRWGSSRVSDEPRRNGSFGSRDSNRELAPSRADEIDNWAAAKKSTGNGFERRERERDRGGFFDSQSRADESDSWVSSKNFVPSEGGRFGSGGGGGFERERKVGFGTSGGADSDNWNKKKGEISVGSERTESGFGGRPRLVLQPRSQSVSNEKEESASGNVAKPKGSNPFGEARPREQVLAEKGQDWKKIDEQLESMKIKETVAVDAVGKRGFGSGNGRASLPEDRTERSWRKALSDDGRPKSAEKVEDVHVEEN. 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g00657 378 MobiDBLite consensus disorder prediction 170 189 - -
Seca5g00657 378 MobiDBLite consensus disorder prediction 190 204 - -
Seca5g00657 378 MobiDBLite consensus disorder prediction 19 41 - -
Seca5g00657 378 MobiDBLite consensus disorder prediction 299 322 - -
Seca5g00657 378 Coils Coil 16 36 - -
Seca5g00657 378 MobiDBLite consensus disorder prediction 138 162 - -
Seca5g00657 378 Pfam Plant specific eukaryotic initiation factor 4B 7 322 IPR010433 GO:0003743
Seca5g00657 378 MobiDBLite consensus disorder prediction 266 286 - -
Seca5g00657 378 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B 1 368 IPR010433 GO:0003743
Seca5g00657 378 MobiDBLite consensus disorder prediction 71 378 - -
Seca5g00657 378 MobiDBLite consensus disorder prediction 345 378 - -
Seca5g00657 378 MobiDBLite consensus disorder prediction 120 137 - -
Seca5g00657 378 MobiDBLite consensus disorder prediction 19 37 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g00657 Seca-Chr5 15759136 15761704 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g00657 1 359 Eukaryotic Initiation Factors Gene Family AT4G38710 49.377 2.18e-67 218
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g00657 - - pvu:PHAVU_011G033300g 529.25