Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g00654 ATGGAGAGATCCTCTGTGTTTTTCATCATCTCTGTGTTCTGTCTCCTTCTTCTATCCCAACCTGCTAGATCAGTAGATGATTCTGAAGCACTTCTGGCACTGAAATCCTCCATTGATATTCTCAACAAGCTTCCATGGCAAAGAGGAAGTGATGTGTGCACATGGGTAGGTGTCAGAGATTGTTTCAAAGGAAGGGTTAGAAAGCTAGTTCTTGAATACTTGAACTTAACAGGAACTTTGGATTCAAAGATCTTGAACCGTTTGGATCAACTAAGAGTCCTCAGCTTCAAAGGAAACTCACTCTCTGGTCCAATCCCAAACCTCTCTGGCTTGATCAATCTCAAATCAATATTCCTCAATGACAACAACTTCTCCGGCGAGTTTCCCATCTCAATCTCTGACCTCCACCGTGTCAAGGTCATAGTTTTGTCAGAAAACCAACTCTCCGGCGACATTCCGGCGTCTTTGCTCAAGCTCCGGCGACTTTATGTTCTCTATTTGGAAGACAACAAGTTCACAGGTTCCATCCCGGAGTTCAACCAAACTGGTTTGAAGTACCTGAATGTCTCTAACAACAAACTCTCCGGCGAGATTCCGGCGACATTGATCCGATTCAATGCGTCGTCGTTTTTGGGTAACCCAGGTCTCTGTGGTGACCAGATCCACAGGGCATGCAAAAGCAGCATTCTTTTGCCGCCGGCGACGAGTCCCAGTTTTCCTGCGAGACCAATTAGTACTTCTTCATCATCGAACAGCAAGAAACTGGTGAAGATAATTGGAGGGAGTGTTGGTGGGGTTGTGTTGTTGCTGATATGTTTGGTTCTGCTGTGGGTAATTTGCAAAAACCGTAGGGAGAAGGTGGGTACTGGAACAAGGAGCAAGGGTGGTGCTGACGTGGCAGAAGGGGAAGGTGGTGGTGGAGGAGGAGGAGCAAGTGGTGGTGGTGGTGGAGGAGGAGATGGTAATAATGAGAGAAAACAAGGGGGTTTTGCATGGGAAGGTGAGGGTCTAGGGAAGTTGGTGTTCTGCGGAGCAGGGGATAGGGAGATGAGTTACAGTTTAGAGGATTTGCTTAAGGCTTCAGCAGAGACTTTGGGAAGGGGTATTATGGGAAGTACATATAAGGCAGTGATGGAATCAGGGTTCATAGTTACTGTGAAGAGGTTGAAAGATGCTAGGTACCCTGCTTTAGAGGAGTTTAGGGCACACATTGAAGTCCTTGGGAGGTTAAGACACCCTAATTTGGTCCCTCTAAGAGCTTACTTTCAGGCTAAAGAGGAACGGCTTCTTGTTTATGATTACTTCCCCAATGGCAGCCTCTTCTCTCTCATTCATGGATCAAAAACATCTGGTGGGGGAAAGCCTCTTCATTGGACATCCTGCCTTAAAATTGCTGAAGATCTAGCAACTGGCCTACTCTATATCCACCAGAACCCTGGCTTAACACATGGAAACCTCAAATCTTCCAATGTGTTACTTGGTTCTGACTTTGAGTCCTGTCTCACTGATTATGGTCTAACTGTGTTCCTTAACCCTGACTCAATGGATGAACCAAGTGCCACTTCATTTTTCTATAGAGCACCTGAATGCCGCAGCTTTCAAAGGGCACAAACTCAACCAGCTGATGTATACAGCTTTGGTGTCCTTCTCCTTGAGCTTTTGACAGGCAAAACACCCTTCCAAGACCTTGTTCAAGCACATGGTTCAGATATACCAATGTGGGTTAGGTCAGTCAGAGAAGAAGAGACAGAGTCAGGGGATGATCCTGCCTCAGGGAATGAAGCATCTGAAGAGAAGCTTCAGGCTCTTTTGAACATTGCAATGGCATGTGTTTCACTGGTGCCAGAGAATAGGCCTACAATGAGAGAGGTTTTGAAGATGATAAGAGATGCAAGAGGGGAAGCTCAGAACTCATCTAACAGCAGTGATCATTCACCTGGTAGATGGTCAGACACTGTTCAAAGCTTTCCAAGGGAAGAACACCTCAGCATATGA 1995 0.4612 MERSSVFFIISVFCLLLLSQPARSVDDSEALLALKSSIDILNKLPWQRGSDVCTWVGVRDCFKGRVRKLVLEYLNLTGTLDSKILNRLDQLRVLSFKGNSLSGPIPNLSGLINLKSIFLNDNNFSGEFPISISDLHRVKVIVLSENQLSGDIPASLLKLRRLYVLYLEDNKFTGSIPEFNQTGLKYLNVSNNKLSGEIPATLIRFNASSFLGNPGLCGDQIHRACKSSILLPPATSPSFPARPISTSSSSNSKKLVKIIGGSVGGVVLLLICLVLLWVICKNRREKVGTGTRSKGGADVAEGEGGGGGGGASGGGGGGGDGNNERKQGGFAWEGEGLGKLVFCGAGDREMSYSLEDLLKASAETLGRGIMGSTYKAVMESGFIVTVKRLKDARYPALEEFRAHIEVLGRLRHPNLVPLRAYFQAKEERLLVYDYFPNGSLFSLIHGSKTSGGGKPLHWTSCLKIAEDLATGLLYIHQNPGLTHGNLKSSNVLLGSDFESCLTDYGLTVFLNPDSMDEPSATSFFYRAPECRSFQRAQTQPADVYSFGVLLLELLTGKTPFQDLVQAHGSDIPMWVRSVREEETESGDDPASGNEASEEKLQALLNIAMACVSLVPENRPTMREVLKMIRDARGEAQNSSNSSDHSPGRWSDTVQSFPREEHLSI. 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g00654 664 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 14 636 IPR046959 -
Seca5g00654 664 MobiDBLite consensus disorder prediction 288 328 - -
Seca5g00654 664 Pfam Leucine rich repeat N-terminal domain 26 59 IPR013210 -
Seca5g00654 664 Pfam Leucine rich repeat 113 172 IPR001611 GO:0005515
Seca5g00654 664 Gene3D Transferase(Phosphotransferase) domain 1 435 653 - -
Seca5g00654 664 Pfam Protein kinase domain 362 626 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g00654 664 Gene3D Phosphorylase Kinase; domain 1 344 434 - -
Seca5g00654 664 Gene3D Ribonuclease Inhibitor 24 181 IPR032675 -
Seca5g00654 664 FunFam Nuclear pore complex protein NUP107 24 178 - -
Seca5g00654 664 MobiDBLite consensus disorder prediction 632 664 - -
Seca5g00654 664 SUPERFAMILY L domain-like 24 205 - -
Seca5g00654 664 ProSiteProfiles Protein kinase domain profile. 359 632 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g00654 664 MobiDBLite consensus disorder prediction 633 664 - -
Seca5g00654 664 Gene3D Ribonuclease Inhibitor 182 228 IPR032675 -
Seca5g00654 664 SUPERFAMILY Protein kinase-like (PK-like) 363 636 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g00654 Seca-Chr5 15681792 15688015 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g00654 4 664 Receptor kinase-like Gene Family AT1G60630 62.388 0.0 776
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Seca5g00654 Pkinase 4.7e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g00654 - - lja:Lj3g3v3500180.1 1017.68