Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g00648 ATGGCTACTCCTGCTGCTACTAAGCCTGATACTCCTATCTTTACTAACTATGTCAATGTCCCACTCTCTATTGACAAGTTAGATGGCAGTAACTATGATACCTGGGCCTCTGATATACGACTCTGGCTAAAGGGACAGGATTATCTTGATCATCTTACTCAGAAGGCTGATTCCATCGACGAAAAAGATCGCCCCCGCTGGTCCAAAGTTGATGCTCAGATTTGCAGTGTTCTTAATTCGACTATTCATCCTACCCTGAAGCAGATATTTCGCGCCCATGAGACATGTGCTGGGGTTTGGGAGCAGGCAAGGGTGCTTTACACCAATGATACTCAGCGCCTCTATGGTGTTTGCCACAACCTCTTGAGTACCATTGTCCCTAGACGACTTGATGGATCCATGGCTGAGTACTTGGGCAAAGTTCATGGTCTTTTACATGACTTCAATGAACTCTTGCCCCCCGCTTCCACTCCTGCCCAAGAACTGGAGCAACGCCAGACTTTCTTTATGTTGATGGCATTGTATGGGCTCCCAGACGAGTATTCTTTGGTCCGTGATCAGATTTTGGGATCTCCGACTGTGCCCACTTTGACCTCCACTTGGTCAACGTTGTTGCGTGTGCCGCCCAAGTCATCTATTGACATACCTTCTCCTATCACCCCTGTTGACTCTTCTGCCTTAGTATCCCAGCGTGATGATCGTAGCCGCTCTCGCAAACCAGGCAAGACTCGTCACAGGTTGAAATTATACATTGTGACAGTCCTAACATATGCACAACAATCTAAAGAACTGGCTAATATTGAGCAAGATAAGCTTGCAAAACGGATCCAGGAATACAGAACACAGTCAGAGATGGAAAATATGCGAGCTTCTAGCAGCTATACAGGGCCTGTGCCAGGTGCTGATGGCACCCATGTTGTAGGTTTGAACTCATACAAAAGCTTTGAAGCAGGAATGCAGTCTTCTGCAACCAAAGGGGAGGCAAGTAATTGGCTTTTTCTGGTTCAAACAGTTAAACAGGGTTATCTGTTAAAACGATCGTCAACCATGCGAGGAGATTGGAAACGGAGGTTCTTTGTACTTGATAACCAAGGGAATTTATTTTATTACAGAGTGACGGGAGCCAAACCCATGGGCTCTCAGTCATATAATTATAGTCGTTCTTCTGAACAAAATAGTGGAATGTTTGGTAGATTCCGTTCAAGGCACAACAGGGGAGCATCACTAAATGAGGATATTTTGGGTTGTTGTACAGTTGATCTGTGCACATCCACTATAAAGATGGATGCGGAGGATACAGATCTGCGACTTTGCTTCCGAATAATTTCTCCCTCAAAAACATATACACTGCAGGCTGAAAACGAAGCTGATAGGATGGACTGGGTAAACAAAATTACTGGAGCTATCACATCACTTTTTAATTCTCAGTTTCTTCAACAGCCTCAATATGGTAGAATGCATTTAGAAAATAAAAACTCAGCAAGTGGTGCTTCTTTGAGAAGTAAATCAGAGGATAGCCATAAATCTTTGACGGATGAAATATATTCCAAAGTAGGTAGTGTCTCTAAGATTTTAAGGAGAATTCCTGGGAATGATAAGTGTGCTGAGTGCAATGCCCCTGAACCAGACTGGGCATCTCTAAACCTTGGCATATTGCTGTGTATTGAATGCTCTGGAGTGCATCGAAATCTTGGAGTTCATATCTCAAAGGTGAGATCTATAACATTAGATGTTAGGGTTTGGGAACCTACTATTTTGGAGTTATTCAATAACTTAGGTAATGCTTATTGTAATTCTATCTGGGAGGGCTTGCTTCAACTTGATGATGAAAGAGTAGGTGAATCAAATGTGCCTACGAAACCATGCTCCACTGATGTCTTCCAATACAAGGAAAAGTACATCCAAGCAAAGTATGTAGAGAAATCACTAATCATCCGAGAAGAGGATTTACCCGGGGATCCTTCAGCTTCTGCAAGAATCTGGCAAGCAGTTCAGGCTATAAATGTACGAGAAGTTTATCGCCTTATCATCACATCAACTTCAAATCTGATAAACACGAAATATGACAATGTGGTTCCCCATGCTGATGCTGAAGGACATCAGCATGATCCAGAAGCCTGTCTGAAAATTAAAGAGATTGATGAATCAGAGAGGTGTTTCAAAGGTTGGTCATTATTACATCTGGCATGTCATTCTGACAGCGTGCTAATGGTTGAGTTGTTGCTCCAATTTGGCGCTGATATGAACTTGCGTGACTATCATGGAAGGACTCCCTTGCATCATTGCATTTCTAGTGGGAAAAATCCATTGGCAAAGTTTCTACTGAGAAGGGGAGCAAAGCCTTCAGTTAAAGATGCCGGTGGACTCACTGTACTTGAAAGAGCAATGGAGATGGGAGCAATAACTGACGAAGAGCTATTTATTAAGCTTGCTGAATGCCAGTAA 2445 0.4307 MATPAATKPDTPIFTNYVNVPLSIDKLDGSNYDTWASDIRLWLKGQDYLDHLTQKADSIDEKDRPRWSKVDAQICSVLNSTIHPTLKQIFRAHETCAGVWEQARVLYTNDTQRLYGVCHNLLSTIVPRRLDGSMAEYLGKVHGLLHDFNELLPPASTPAQELEQRQTFFMLMALYGLPDEYSLVRDQILGSPTVPTLTSTWSTLLRVPPKSSIDIPSPITPVDSSALVSQRDDRSRSRKPGKTRHRLKLYIVTVLTYAQQSKELANIEQDKLAKRIQEYRTQSEMENMRASSSYTGPVPGADGTHVVGLNSYKSFEAGMQSSATKGEASNWLFLVQTVKQGYLLKRSSTMRGDWKRRFFVLDNQGNLFYYRVTGAKPMGSQSYNYSRSSEQNSGMFGRFRSRHNRGASLNEDILGCCTVDLCTSTIKMDAEDTDLRLCFRIISPSKTYTLQAENEADRMDWVNKITGAITSLFNSQFLQQPQYGRMHLENKNSASGASLRSKSEDSHKSLTDEIYSKVGSVSKILRRIPGNDKCAECNAPEPDWASLNLGILLCIECSGVHRNLGVHISKVRSITLDVRVWEPTILELFNNLGNAYCNSIWEGLLQLDDERVGESNVPTKPCSTDVFQYKEKYIQAKYVEKSLIIREEDLPGDPSASARIWQAVQAINVREVYRLIITSTSNLINTKYDNVVPHADAEGHQHDPEACLKIKEIDESERCFKGWSLLHLACHSDSVLMVELLLQFGADMNLRDYHGRTPLHHCISSGKNPLAKFLLRRGAKPSVKDAGGLTVLERAMEMGAITDEELFIKLAECQ. 815
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g00648 814 Coils Coil 262 282 - -
Seca5g00648 814 Pfam Putative GTPase activating protein for Arf 522 643 IPR001164 GO:0005096
Seca5g00648 814 ProSiteProfiles ARF GTPase-activating proteins domain profile. 519 651 IPR001164 GO:0005096
Seca5g00648 814 MobiDBLite consensus disorder prediction 215 242 - -
Seca5g00648 814 SMART ANK_2a 754 783 IPR002110 GO:0005515
Seca5g00648 814 SMART ANK_2a 721 750 IPR002110 GO:0005515
Seca5g00648 814 Gene3D - 334 490 IPR011993 -
Seca5g00648 814 Gene3D - 655 806 IPR036770 -
Seca5g00648 814 SUPERFAMILY Ankyrin repeat 684 809 IPR036770 -
Seca5g00648 814 CDD PH_ACAP 339 474 - -
Seca5g00648 814 ProSiteProfiles Ankyrin repeat region circular profile. 721 752 - -
Seca5g00648 814 ProSiteProfiles Ankyrin repeat profile. 721 753 IPR002110 GO:0005515
Seca5g00648 814 ProSiteProfiles PH domain profile. 336 470 IPR001849 -
Seca5g00648 814 ProSiteProfiles Ankyrin repeat profile. 754 786 IPR002110 GO:0005515
Seca5g00648 814 ProSiteProfiles Ankyrin repeat region circular profile. 754 785 - -
Seca5g00648 814 SMART PH_update 337 472 IPR001849 -
Seca5g00648 814 SUPERFAMILY ArfGap/RecO-like zinc finger 522 644 IPR037278 -
Seca5g00648 814 SMART arf_gap_3 519 651 IPR001164 GO:0005096
Seca5g00648 814 Pfam PH domain 338 469 IPR001849 -
Seca5g00648 814 Gene3D Arf GTPase activating protein 500 650 IPR038508 -
Seca5g00648 814 PANTHER CENTAURIN/ARF 245 811 IPR045258 GO:0005096
Seca5g00648 814 SUPERFAMILY PH domain-like 337 482 - -
Seca5g00648 814 CDD ArfGap 523 638 - -
Seca5g00648 814 PRINTS HIV Rev interacting protein signature 573 594 IPR001164 GO:0005096
Seca5g00648 814 PRINTS HIV Rev interacting protein signature 531 550 IPR001164 GO:0005096
Seca5g00648 814 PRINTS HIV Rev interacting protein signature 550 567 IPR001164 GO:0005096
Seca5g00648 814 Pfam Ankyrin repeats (3 copies) 714 785 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g00648 Seca-Chr5 15537521 15552824 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g00648 521 644 C2H2 Transcription Factor Family AT3G07940 39.200 2.24e-18 84.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g00648 K12489 - gmx:100796740 960.674