Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g00645 ATGCTGTCCAGCAATGAAGAAAAATATGTGTCTCTCAACAATCTATCCACCAACCCAGATAATCTGAACATAAAAGTGAGGATTTCACGTATATGGGACACACTCAACATACATCGAAAGAAAGAATTAATTAGCACAGACATGGTGCTAATTGATGAAAAGAGCAATTACATACATGCTTCTATAGGGAGAAATATTGCTCATAAGTTCAAGCCTCTTCTAAAGGAAGGAAAAATTTACACCATTAAAAATTTTGAGGTGACAAACAATAAAGAAAAATTCCCAGTGGTCCAAAAGAACCCTTCAATGTTACATTTTTGTGCCACAACAATTGTGAAAGATGCAGGTTGTGATGAAAGCATCATTCCTCACCATGTTTTTGAATTTGTTAATCTTGATGATTTACAAAGTCGGTGTGGAAAGGATGTGTTGACAGATGTGATTGGAGTTATCACAAAAGTTGGTCCAATTGAAGAGAAGAGGACTATTGGGGGCAGCGTTGATACCTTGACACTTCACTTACAAGACATAAGGGGAAATAGGGTTAAAGTGACAATATGGGATGAATATGTAAAGCTATTTGAGCAGAAATTGAAAGAAAATGTGTCTAAAGATCATCAAGTCACTGTTGCAATTTTCACATCAACTATAATTAAAGAATTTCGAGGTGAATTGTCTATTTCCACATCAAGATCAACAAATATTTATGTCAACATAGACATACCAGAATCTAATGAGCTCATACAATCATTCAAGGATTCAAGTGATGAACCTATAGTTGGTAACTTTGAGGTGTCAAAGGATGGTGTCTGTCCTAAAACAGTGAAGACTATAGCTGAACTTCTGTCCATGGCAAGTTTAAAGAGTAATACGAATGATGTGTATTGTTGTGCTGCTACTGTAAACGATATCTTGCTGAAAAATGGTTGGAATTATGTTTGTTGCCCTCATTGCAAAAAAAAGGCTGATAGGACAACTACAAATTTCAGTTGTCAACATTGCCACAAAGTTGTTGAGTATCCAATGACAAGGTTGCGTTTGGAGCTTGATGTCAAAGATTCAACAGATTCTACCATATTTGTTCTATTTCATGAAGTTGCTGAACAATTAACACAATTGAACTTAGGAGACCATGCCACAACCTTTGAAAATGAAAATGGTGATGATTTGAACCTGCCACCCCAACTCCTAAAAATCATAGGTACTACCCATGTCTTCCAAATAAAAATGAGCACCTATTTTGAAAGCTATGGAAGGCGCAGTTTCACATCAAATAAAATTCTCAAGCCAGTTGTTAAGATTGAGGACGAAGATACGAAAGAAACCTCAGGTGCCAAATCAAAGGAAAATACATTGGAAAAGATTGCTTCTTCCTTAAATGGATCTTCAGATGCAAAAAAAATAAATTCACCACAAAAGAGGAGAAAGTTAAGTTTTCATTCTAAAGACATGAATCAAAATTCAGAAAGCACAATGTTATGTAATCAACAAGTCACAGGAGAAAGAAACATAAAAAGAAAGAAAAATGAAAGAAATAAAGCACCTTTGCATTTACTGGAACACATAAATGGTGACGGACCAACTTATATGGATCTTGGACCTCCAAATTTTGCATGTGAAGAATGTGGAAGCACCATGTGGTATGAAGAAAGAACAGATAAACCACATCGACCAAAAAAACCAAAATTTTCTATATGCTGCCAACGAGGAAAAGTAAAACTGCCTATTCTTGAAGAACCACCAGAAGCTTTGAAAGCACTTTTAAGTTTTGAAGGCGGTCGACACTCTATGAAGTTTAGGGAAAAAATAAGAGCGTATAATTCTATTTTTGCTTTCACATCCATGGGTGCTAAAATAGACAACACAGTCAACTTACGGCCTGGTCCTTATGTGTTCAAAATTAGTGGTCAAAATTATCACAGAATTGGAGGACTCATACCTGAAGAAGGAAATCAGCCAAAGTTCTCCCAGCTTTATGTCCATGATACTGAAAATGAAGTCCAAAATAGACTACGTTCCTTAAATCATGGCAAAATTGCTGAGGATCTTGATCCAACTATTGTTCAAAGCTTAAAAGAAATGCTTGATATGTATAATCCCATTGCCCAAGTATTCAGAATGGCAAGAGACAGATTATCTACATCTCAAACAAACAATGTACATATCAAGTTACTTGGAACAAGATCAATAGAATCGCGGCAATATAACAAACCCTCCTCAACAGAAATTGCAGCTCTAATTGTTGGAGATTTGGGACAATCAATTGGAACAAGAGATGTAGTAATAGAGCATAAAATAGATGGCCTCCAAAGAATATCAGAGTTACAACCTTCATTTATGGCTATGCAATATCCATTATTATTTCCATATGGTGAAGATGGGTTTCACTTAGACATTTCTTATTGTCAAAATGATGGGGGGAATAAAACAAAGCGAGAAAATGTGACAATGAGAGAATATTATGCATACCGCATACAACAAAGAGGCTTAGAGGCAAAGACTCTTATTTCCGCCGGTCGATTATTCCAACAATATATTGTTGATGCATACACGGCTATAGAAGAAGATCGATTGAGATGGATTAAACAAAATCAAACAGTGCTACGCACGGAGTTGTACAAGAATGTATGTGATGCAGTAGTTCGTGGAGATACTATTGCTGCTGCTACTGGTAAGAGAATTGTTTTACCTTCTTCTTTTACAGGTGGTCCTCGATATATGGTCCAAAACTATCAAGATGCTATGGCTATATGTAGAACCTTTGGAAATCCAGATATTTTCATGACATTTACTGCCAATCCAAAGTGGCCTGAGATTCAGTATATACTTCATCAAGTTCCACGACAATCAGCTGATGATAGACCAGACATTAAGACTAGAGTCTTCAAGATGAAAGTTGATCAACTAATGAAGCACATAGTTGAAGGACAATATTTTGGTCAAACTATATCAGCAGAATTACCATCTCAAGAAGATGATCCAATGGGTTTTAATGCTGTCACACAATTCATGTTGCATGGACCATGTGGAAGTGGAAACAAAAATGCACCTTGCATGGTTGATGGTTTTTGCAGCCGAAATTACCCCAAAAAATTCAGTAATGAAACAACCATAGACAAGGATGGCTTTCCTACTTATAGAAGGAGGGATGATGGAAGACATGTGAAAAAAGGAGATATCAACTTAGACAACCAATTTGTTGTTCCATATAATAGGGATTTATTGCTAAAATTCCAGGCACACCTAAATGTTGAATGGTGCAATAAGTCCAGAGCTATCAAGTACCTCTTTAAGTATCTACACAAAGGGCCTGATAGAGCAACAATCCTAATAGAAGAAAATGTTTCTGTGTCAAACACATCAAACTCAACTGAGATAAGAGAAGTTGATGAGATCAAAACATATTTGGATTGCAGGTATGTCTCCGCATGTGAAGCATGTTGGAGAATATTTAATTTTGATATACATTATAGAAGTCCATCGGTAATGAGATTGACATTCCATTTACCCGGAGAAAACTCACTCATTCTAAGAGACTCCCAACCTTTGTCATCAGTCATAAGAAGAGATGGGATTGAACATACCATGTTTACAGAATGGATGAGGATGAATTCAATTAGTCCTGAAGCACGGCTATTGAATGACGACAAAGAGTGGAATGTTGCATTGAATGAAGCAGCCCATTGGGCCTCAGGTTCTCAGTTGAGGGAGTTATTTGTCACTATTCTTCTTTTCGGTGAAGTAACAAATGTGGAACAATTTTGGAAAAACAGTTGGCAACTATTGTCTGATGATATTCTCTACAACAAAAGACGCTTATTTCATCATTTTGGTTTAGAGCTCACTGTTGAACAAATCAAAACATATTGCTTGATTGAAATTGAAAAGCTTTTAATCAAGAATGGGAAAGAGCTATCTGATTTCAATGGAATGCCTTTGCCAGATAAGTCAGCAGTGGAACCTATGGATAATAGACTAATTAGGGAGGAGCTGAATTATAATATTCAAGAATTGGAAAATGAACATAGAAGATGTTATCCATTACTAAATCAGGAACAAAGTGAAATATATAATGTTGTTATGCATGCTGTCAACACTAACACAGGTGGACTATACTTTGTCTATGGGCACGGAGGCACTGGGAAGACTTTTTTGTATAGGACAATCATTGCAAAACTCAGGCCAGAAAAAAAAATAGTGCTTGCTGTTGCTTCATCAGGTATTGCATCATTATTACTCCCTGGAGGCAGAACAGCCCATAGTAGATTTCAAATACCATTAGATATTTTTGAAAATAGCACTTGCTCAATCAAGCAAAATACTCAACTTGCTCAGTTAATGATTCAAACAGATCTCATTATTTGGGATGAGGCACCAATGACAAACAAATTAGCATTTGAAGCACTACATAGATCACTACAAGACATTGTTGGTTACAAGTATCCAGACAAAGCCACAGATCCATTTGGAGGAAAAACAATCCTTCTTGGCGGAGATTTTAGGCAAATATTGCCTGTAATAACAAAAGGACAAAGGCAGGACATAGTGCAAGCATGTATTAACAACTCTTATTTGTGGGATCATTGCAAAATGTTCAAGCTATGTAAAAGCATGAGAGTTAGTGATAATACTTCTTCGGGTGAACTAAACTCTTTAGCACGTGAGTTTAATACATGGCTTCTTCAAATTGGTGATGGAAAAATACCAACCATTAGTAGAGAAGGAGAAGAGGTTCCGTCATGGACAAGAATACCAAGTCAATACCTATTAAGCCCAATGGGTGATTCACTCAAACAAATTGTGGAAAGCACATATCCAAATTTACAACAACATCTATGGAATGAAGAATACCTCAGAGAAAGAGCAATACTCACTCCTTTAAATGACACTGCTGATGAAATCAACAATTATATTATTGACATGATTGAAGGATCGATAAAACAATATAGAAGCTCAGACGAGATTGACAAGGCAACTGACAACATTATCGAACAAGAGCTTATGTATCCGGTAGAATTTTTAAATTCCTTAAATTTTACTGGAATTCCAAATCATTGCTTGAACCTCAAAGAAGGAATGCCAATCATGTTATTAAGGAATATAAATCCAGCATTGGGAATGTGCAATGGAACAAGACTCCTTATCATGCATCTAGGAAATTGGATAATAGAAGCAAAAATAATTATAGGAACCAACATTGGTGCAAAGGTACTTATCCCACGAATAGTTTTAACAGCATCTGACTCAAAGTGGCCATTTGTCTTGCGAAGAAAACAATTCCCAATAAAGGTATGCTATGCAATGACAATAAACAAGAGTCAAGGACAATCATTGAACTACATGGGATTATATTTGCCAAAACCTGTATTTTGTCATGGACAATTATATGTTGCATTGTCAAGAGTCACTTCACCGTTAGGTTTGCGAATCCTTATTTTTGAGCAAGATGATAGATATATTGAGTACACTAAAAATGTTGTGTACCATGAAGTTTTTAATGGACTGCTTTGA 5511 0.3611 MLSSNEEKYVSLNNLSTNPDNLNIKVRISRIWDTLNIHRKKELISTDMVLIDEKSNYIHASIGRNIAHKFKPLLKEGKIYTIKNFEVTNNKEKFPVVQKNPSMLHFCATTIVKDAGCDESIIPHHVFEFVNLDDLQSRCGKDVLTDVIGVITKVGPIEEKRTIGGSVDTLTLHLQDIRGNRVKVTIWDEYVKLFEQKLKENVSKDHQVTVAIFTSTIIKEFRGELSISTSRSTNIYVNIDIPESNELIQSFKDSSDEPIVGNFEVSKDGVCPKTVKTIAELLSMASLKSNTNDVYCCAATVNDILLKNGWNYVCCPHCKKKADRTTTNFSCQHCHKVVEYPMTRLRLELDVKDSTDSTIFVLFHEVAEQLTQLNLGDHATTFENENGDDLNLPPQLLKIIGTTHVFQIKMSTYFESYGRRSFTSNKILKPVVKIEDEDTKETSGAKSKENTLEKIASSLNGSSDAKKINSPQKRRKLSFHSKDMNQNSESTMLCNQQVTGERNIKRKKNERNKAPLHLLEHINGDGPTYMDLGPPNFACEECGSTMWYEERTDKPHRPKKPKFSICCQRGKVKLPILEEPPEALKALLSFEGGRHSMKFREKIRAYNSIFAFTSMGAKIDNTVNLRPGPYVFKISGQNYHRIGGLIPEEGNQPKFSQLYVHDTENEVQNRLRSLNHGKIAEDLDPTIVQSLKEMLDMYNPIAQVFRMARDRLSTSQTNNVHIKLLGTRSIESRQYNKPSSTEIAALIVGDLGQSIGTRDVVIEHKIDGLQRISELQPSFMAMQYPLLFPYGEDGFHLDISYCQNDGGNKTKRENVTMREYYAYRIQQRGLEAKTLISAGRLFQQYIVDAYTAIEEDRLRWIKQNQTVLRTELYKNVCDAVVRGDTIAAATGKRIVLPSSFTGGPRYMVQNYQDAMAICRTFGNPDIFMTFTANPKWPEIQYILHQVPRQSADDRPDIKTRVFKMKVDQLMKHIVEGQYFGQTISAELPSQEDDPMGFNAVTQFMLHGPCGSGNKNAPCMVDGFCSRNYPKKFSNETTIDKDGFPTYRRRDDGRHVKKGDINLDNQFVVPYNRDLLLKFQAHLNVEWCNKSRAIKYLFKYLHKGPDRATILIEENVSVSNTSNSTEIREVDEIKTYLDCRYVSACEACWRIFNFDIHYRSPSVMRLTFHLPGENSLILRDSQPLSSVIRRDGIEHTMFTEWMRMNSISPEARLLNDDKEWNVALNEAAHWASGSQLRELFVTILLFGEVTNVEQFWKNSWQLLSDDILYNKRRLFHHFGLELTVEQIKTYCLIEIEKLLIKNGKELSDFNGMPLPDKSAVEPMDNRLIREELNYNIQELENEHRRCYPLLNQEQSEIYNVVMHAVNTNTGGLYFVYGHGGTGKTFLYRTIIAKLRPEKKIVLAVASSGIASLLLPGGRTAHSRFQIPLDIFENSTCSIKQNTQLAQLMIQTDLIIWDEAPMTNKLAFEALHRSLQDIVGYKYPDKATDPFGGKTILLGGDFRQILPVITKGQRQDIVQACINNSYLWDHCKMFKLCKSMRVSDNTSSGELNSLAREFNTWLLQIGDGKIPTISREGEEVPSWTRIPSQYLLSPMGDSLKQIVESTYPNLQQHLWNEEYLRERAILTPLNDTADEINNYIIDMIEGSIKQYRSSDEIDKATDNIIEQELMYPVEFLNSLNFTGIPNHCLNLKEGMPIMLLRNINPALGMCNGTRLLIMHLGNWIIEAKIIIGTNIGAKVLIPRIVLTASDSKWPFVLRRKQFPIKVCYAMTINKSQGQSLNYMGLYLPKPVFCHGQLYVALSRVTSPLGLRILIFEQDDRYIEYTKNVVYHEVFNGLL. 1837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g00645 1836 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1304 1534 IPR027417 -
Seca5g00645 1836 SUPERFAMILY Nucleic acid-binding proteins 127 252 IPR012340 -
Seca5g00645 1836 Pfam Replication factor-A C terminal domain 297 418 IPR013955 -
Seca5g00645 1836 Pfam Replication protein A OB domain 139 238 IPR031657 -
Seca5g00645 1836 Pfam Helitron helicase-like domain at N-terminus 820 982 IPR025476 -
Seca5g00645 1836 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1488 1832 IPR027417 -
Seca5g00645 1836 CDD RPA1_DBD_A_like 24 112 - -
Seca5g00645 1836 Gene3D - 1346 1533 IPR027417 -
Seca5g00645 1836 CDD RPA1_DBD_B_like 146 252 - -
Seca5g00645 1836 Gene3D - 122 258 IPR012340 -
Seca5g00645 1836 PANTHER UNCHARACTERIZED 866 1814 - -
Seca5g00645 1836 CDD SF1_C_RecD 1766 1808 - -
Seca5g00645 1836 SUPERFAMILY Nucleic acid-binding proteins 8 115 IPR012340 -
Seca5g00645 1836 Gene3D - 7 114 IPR012340 -
Seca5g00645 1836 CDD RPA1_DBD_C 278 438 IPR047192 -
Seca5g00645 1836 Pfam PIF1-like helicase 1349 1718 IPR010285 GO:0000723|GO:0003678|GO:0006281
Seca5g00645 1836 Gene3D - 264 441 IPR012340 -
Seca5g00645 1836 SUPERFAMILY Nucleic acid-binding proteins 275 412 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g00645 Seca-Chr5 15482076 15491991 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g00645 8 495 Core DNA Replication Machinery Family AT4G19130 23.340 1.29e-20 97.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g00645 - - mtr:120580622 1535.39