Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g00629 ATGTCTAGTATTGACGTAAATTTTTCTGGGATAGTGTTTGAGCGAAAGGTGGTCTACAAGGAGTGTAGGCACAACCTTGCAGCAAAACACAGTCTTGTTTTCCATGATGGATGCCTAGAGTTTGTCAAAGACAACGTCAATGATTCTATGTTGTGTGTTGCTTGTGGGTGTCACCAAAACTTTCACCGCAGACACATTGTTTACAACCCCATAGCCTTACCTCAAGTAACAGACAACAATATGAATGCAACAAGGTCGTCACTTCTGGGCCCAATTTTGAAATTCCACCCCTCAGGCCCAGAGCCACCAATGAAGAAGCGGAGGACAAGGTTCACACCGGAGCAAAGGAATCAATTGGTGACTTTTGCTGAGGGGTTTGGGTGGAAACATCAAATGGCAAACAAGGAAGAAATCCAGCGATTCTGCTCAGAGATGGGAATCACTCACAAAATATTAATGGTTTGGCTCAACAACAACCGTCATCGAGCAAGACACAAGAATTAA 504 0.4385 MSSIDVNFSGIVFERKVVYKECRHNLAAKHSLVFHDGCLEFVKDNVNDSMLCVACGCHQNFHRRHIVYNPIALPQVTDNNMNATRSSLLGPILKFHPSGPEPPMKKRRTRFTPEQRNQLVTFAEGFGWKHQMANKEEIQRFCSEMGITHKILMVWLNNNRHRARHKN. 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g00629 167 NCBIfam homeobox domain, ZF-HD class 105 160 IPR006455 -
Seca5g00629 167 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 19 65 IPR006456 -
Seca5g00629 167 Gene3D - 96 165 - -
Seca5g00629 167 ProSiteProfiles 'Homeobox' domain profile. 102 166 IPR001356 GO:0003677
Seca5g00629 167 Pfam ZF-HD protein dimerisation region 17 66 IPR006456 -
Seca5g00629 167 SUPERFAMILY Homeodomain-like 98 165 IPR009057 -
Seca5g00629 167 CDD homeodomain 105 167 IPR001356 GO:0003677
Seca5g00629 167 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 15 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g00629 Seca-Chr5 14921540 14922043 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g00629 11 161 ZF-HD Transcription Factor Family AT1G69600 33.508 8.33e-24 91.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Seca5g00629 ZF-HD_dimer 4.4e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g00629 - - gmx:102668663 142.51