Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g00628 ATGTCTAGTATTGACGTAAATTTGTCTGGGATAGTGTTTGAGCAAAAGGTGGTCTACAAGGAGTGTAGGCACAACCTTGCAGCAGAACACAGTCTTGTTTTCCATGATGGATGCCTAGAGTTTGTCAAAGACAGCGCCAATGATGCTATGTTGTGTGTTTCTTGTGGGTGTCACCAAAACTTTCACCGCAGACACATTGTTTACAACCCCATAGCCTTACCTCAAGTAACAGACAAAAATATGAATGCAACAAGGTCGTCACTTGTGGGCCCAATTGTGAAATTCCACCCCTCAGGCCCAGAGCCACCAATGAAGAAGCGGAGGACAAGGTTCACACCGGAGCAAAGGAATCAATTGGTGACTTTTGCTGAGGGGTTTGGGTGGAAACCTCAAATGGCAAACAAGGAAGAAATCCAGCGATTCTGCTCAAAGATGGGAATTGTAACGCCCTAA 453 0.4547 MSSIDVNLSGIVFEQKVVYKECRHNLAAEHSLVFHDGCLEFVKDSANDAMLCVSCGCHQNFHRRHIVYNPIALPQVTDKNMNATRSSLVGPIVKFHPSGPEPPMKKRRTRFTPEQRNQLVTFAEGFGWKPQMANKEEIQRFCSKMGIVTP. 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g00628 150 Pfam ZF-HD protein dimerisation region 17 66 IPR006456 -
Seca5g00628 150 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 15 147 - -
Seca5g00628 150 Gene3D - 96 149 - -
Seca5g00628 150 SUPERFAMILY Homeodomain-like 97 147 IPR009057 -
Seca5g00628 150 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 19 65 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g00628 Seca-Chr5 14891220 14891672 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g00628 19 147 ZF-HD Transcription Factor Family AT5G42780 30.818 3.31e-17 73.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Seca5g00628 ZF-HD_dimer 5.9e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g00628 - - lja:Lj4g3v2313490.1 120.168