Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g00626 ATGTCTAGTATTGACGTAAATTTGTCTGGGATAGTGTTTGAGCAAAAGGTGGTCTACAAGGAGTGTCGGCACAACCTTGCAGCAGAACACAGTCTTGTTTTCCATGATGGATGCCTAGAGTTTGTCAAAGACAGCGCCAATGATGCTATGTTGTGTGTTGCTTGTGGGTGTCACCAAAATTTTCACCGCAGACACATTGTTTACAACCCCATAGCCTTACCTCAAGTAACAGACAACAATATGAATGCAACAAGGTCGTCACTTGTGGGCCCAATTGTGAAATTCCACCCCTCAGGCCCAGAGCCACCAATGAAGAAGCGGAGGACAAGGTTCACACTGGAGCAAAGGAATCAATTGGTGACTTTTGTTGAGGGGTTTGGGTGGAAACCTCAAATGGCAAACAAGGAAGAAATCCAACGATTCTGCTCAGAGATGGGAATCACTCACAAAATATTAATGGTTTGGCTCAACAACAACCATCATCGAGCAACACACAAGAATTAA 504 0.4425 MSSIDVNLSGIVFEQKVVYKECRHNLAAEHSLVFHDGCLEFVKDSANDAMLCVACGCHQNFHRRHIVYNPIALPQVTDNNMNATRSSLVGPIVKFHPSGPEPPMKKRRTRFTLEQRNQLVTFVEGFGWKPQMANKEEIQRFCSEMGITHKILMVWLNNNHHRATHKN. 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g00626 167 Pfam ZF-HD protein dimerisation region 17 66 IPR006456 -
Seca5g00626 167 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 19 65 IPR006456 -
Seca5g00626 167 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 15 161 - -
Seca5g00626 167 NCBIfam homeobox domain, ZF-HD class 105 160 IPR006455 -
Seca5g00626 167 SUPERFAMILY Homeodomain-like 98 162 IPR009057 -
Seca5g00626 167 Gene3D - 96 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g00626 Seca-Chr5 14840312 14840815 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g00626 16 159 ZF-HD Transcription Factor Family AT4G24660 29.940 2.75e-22 87.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Seca5g00626 ZF-HD_dimer 1.6e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g00626 - - gmx:102668663 142.51