Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g00624 ATGTCTAGTATTGACGTAAATTTGTCTGGGATAGTGTTTGAGAAAAAGGTGGTCTACAAGGAGTGTAGGCACAACCTTGCAGCAGAACACAGTCTTGTTTTCCATGATGGATGCCTAGAGTTTGTCAAAGACAGCGCCAATGATGCTATGTTGTGTGTTGTTTGTGGGTGTCACCAAAACTTTCACCGCAGACACATTGTTTACAACCCCATAGCCTTACCTCAAGTAACAGACAACAATAGCCCAGAGCCACCAATGAAGAAGCGGAGGACAAGGTTCACACCAGAGCAAAGGAATCAATTGGTTACTTTTGCTGAGGGGTTTGGGTGGAAACCTCAAATGGAAAACAAGGAAGAAATCCAGCGATTCTGCTCAGAGATGGGAATCAGTCAAAAAATATTAATGGTTTGGATTAACAACAACCGTCATTGA 432 0.4282 MSSIDVNLSGIVFEKKVVYKECRHNLAAEHSLVFHDGCLEFVKDSANDAMLCVVCGCHQNFHRRHIVYNPIALPQVTDNNSPEPPMKKRRTRFTPEQRNQLVTFAEGFGWKPQMENKEEIQRFCSEMGISQKILMVWINNNRH. 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g00624 143 Pfam ZF-HD protein dimerisation region 17 66 IPR006456 -
Seca5g00624 143 SUPERFAMILY Homeodomain-like 77 143 IPR009057 -
Seca5g00624 143 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 19 65 IPR006456 -
Seca5g00624 143 NCBIfam homeobox domain, ZF-HD class 87 142 IPR006455 -
Seca5g00624 143 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 15 143 - -
Seca5g00624 143 Gene3D - 75 143 - -
Seca5g00624 143 ProSiteProfiles 'Homeobox' domain profile. 84 143 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g00624 Seca-Chr5 14647485 14657507 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g00624 16 142 ZF-HD Transcription Factor Family AT4G24660 30.357 1.01e-21 85.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Seca5g00624 ZF-HD_dimer 4.7e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g00624 - - gmx:102668663 150.214