Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g00623 ATGTCTAGTATTGACGTAAATTTGTCTAGGATAGTGTTTGAGCAAAAGGTGGTCTACAAGGAGTGTAGGCACAACCTTGCAACAGAACACAGTCTTGTTTTCCATGATGGATGCCTAGAGTTTGTCAAAGACAGCGCCAATGATGCTATGTTGTGTGTTGCTTGTGGGTGTCACCAAAACTTTCACCGCAGACACATTGTTTACAACCCCGTAGCCTTACCTCAAGTAACGGACAACAATATGAATGCATCAATGTCGTCGCTTGTGGGCCCAATTGTGAAATTCCACCCCTCAGGCCCAGAGCCACCAATGAAGACGCGGAGGACAAGGTTCACACCGGAGCAAAGGAATCAATTGGTGACTTTTGCTGAGGGGTTTGGGTGGAAACCTCAAATGGCAAACAAGGAATAA 411 0.4599 MSSIDVNLSRIVFEQKVVYKECRHNLATEHSLVFHDGCLEFVKDSANDAMLCVACGCHQNFHRRHIVYNPVALPQVTDNNMNASMSSLVGPIVKFHPSGPEPPMKTRRTRFTPEQRNQLVTFAEGFGWKPQMANKE. 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g00623 136 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 15 134 - -
Seca5g00623 136 Gene3D - 96 136 - -
Seca5g00623 136 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 19 65 IPR006456 -
Seca5g00623 136 Pfam ZF-HD protein dimerisation region 17 66 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g00623 Seca-Chr5 14610307 14610717 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g00623 16 131 ZF-HD Transcription Factor Family AT4G24660 31.655 5.81e-14 64.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Seca5g00623 ZF-HD_dimer 3.1e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g00623 - - lja:Lj4g3v2313490.1 105.531