Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g00588 ATGTACTTTAAGAGAATACAGTGCAGAGATCGTAGATGGGCTTTATTGTTGCAGCCATCCAAATACTTCTACAGGCCAAGATTCTCTGATCATCCATGCTCTCATTCTTTGTCCCCTGAGACCACTGTGAAAGAATATGCTTCACATGGCAGTATCATCAGAAGGCATTTTTTAGGTTCAGATTCATCTAGGCATGCTTTATCTAGAAATAGTTATACTGGTCTAGACAAAAGGTGTAGTTTAGGTCTTAAGAGTACTCAGTTACAAGCTTATAGTTCTGAAAGTGATGGAAGAAATGCAAGTGAGAATAAACATGTACATGTTAATGATGGGGCTAACTTTGACAAGGGGCAGAATCAACAAGAGAAGTCTCGGGAAGATGCTAAGAACTGTAATGCCCATACACGACTTGGAGAACAGGATCAAGAGGAGTGGCTTAATAATGAGAAGCTTGCCATAGAAAGTAAAAGGAGAGAATCACCTTTTTTGACAAGAAAGGATAAGTTTAAAAATGAGTTCTTGAGAAGAATTGTTCCTTGGGAGAAAATAAACATTTCCTGGGATACATTTCCTTATCACATTCATGAGCATACCAAAAATCTTCTGGTGGAATGTGCTGCTTCCCATTTGAGACATAATAAGTTTGCTTCATCTTTTGGGACTCGCCTCACATCTTCAAGTGGAAGAATATTGCTTCAGAGCATTCCTGGCACTGAGCTCTATCGTGAAAGATTAGTTAGAGCTCTTGCACAAGATTTACAAGTTCCTTTATTGGTGCTTGATAGCAACATCCTTGCTCCTTATGATATTGATGATGATTTATCGTCAGACTACGAATCTGATGATGATAATGTAGAATCTGGGGAGGACGGTTCTCTGGAGTCAGAGAATGAAGACGATAATGATGCTAGTAATGAAGAGGAGTGGACTAGCAGTGCTGATGCAAAGTCCGATGCAAGTGATAACGAAGACGCACTAGCATCTGCTGAAGCAGCCCTTAAGAAGGTTAAAGCGGCTGTTCAGAAACTTGTCCCTTACAATGTTGAAGAATTTGAGAAGCAGATAACATCTGGAGAATCTGAGAGTTCTGAGTCCTCCAAGTCTAATGATGCCAAGTCTTCTGATAAATCTGGATGTCAGCTAAGAAAAGGTGACCGTGTGAAGTACATTGGGCCATCTGTTCAAGTTAAAGCTGATGATAGGATCATACTGGGGAAGATAATGACATCTGATGGTCCAACTAATGCTTATACTATTATACATGGCAGGTGGGTTGCTTTAACTAATGGTCAGAGAGGAGAGGTATATGAGGTTAATGGAGATCTAGTTGCTGTCCTCTTGGATAATAATGAAGATAGGGCCAATGAGGTGGAGAACCTTAATAACAATCAAACAGAACCACCAATTTATTGGATACATGTTAAGGACATTGAGAATGATCTTGATGCTCAATCACAGGATTGCTACATAGCAGTGGAGGCTTTATGTGAGGTTTTGCATTCCAAACAACCTCTTATTGTCTATTTTCCTGACAGTTCACAGTGGTTGCATAGAGCAGTTCCTAAGTCAAACCGAAGTGAGTTTTTTAATAAGGTTGAAGAGATGTTTGACAAGTTATCTGGCCCCATAGTTTTGATTTGTGGTCAAAACAAAGTTCAGTCAGGATCAAAGGAGAAAGAACAATTTACGATGATACTTCCGAACTTTGGACGTGTTGCTAAGCTGCCTCTCTCTCTGAAGCGTTTGACTGAGGGATATAAAGGGGGAAAGACATCAGAAGATGACGAAATTAACAAGCTTTTCTCTAATGTTTTGTCTATACAACCACCTAAGGATGAGAATGTACTGGGAACATTCAAGAAACAACTTGAGGATGACAGGAAAATTGTGATTTCACGTAGTAATTTGAATGAACTACGGAAGGTTCTTGAAGAACATCAGCTCTCATGCATGGACCTCTTGCACGTAAATACTGATGGCATCATTTTGACAAAGCAAAAAGCTGAAAAAGTGGTAGGCTGGGCAAAAAATCATTACTTGTCATCATGCCTGCTTCCTTCTATTAAAGGAGAAAGATTGTGCCTGCCTCGTGAAAGTCTTGAAATTGCAATCTCAAGGTTGAAGGGAATGGAAACAATGTCACGGAAACCTTCTCAAAGCCTCAAGAACCTCGCAAAGGATGAGTTTGAGAGCAATTTCATTTCAGCTGTAGTACCTCCTGGTGAAATTGGGGTGAAGTTTGATGACATAGGTGCTCTTGAAGATGTAAAGAAGGCACTTAATGAACTTGTTATTCTTCCAATGGGAAGGCCTGAGCTTTTCTGTCATGGAAACCTGTTGCGGCCCTGCAAAGGAATATTACTTTTTGGTCCTCCTGGAACTGGGAAAACCCTTCTGGCTAAGGCACTTGCAACAGAAGCTGGTGCAAATTTTATCAGCATAACTGGATCGACTCTTACTTCAAAGTGGTTTGGAGATGCTGAAAAACTAACCAAAGCGCTTTTCTCATTTGCCAGCAAGCTTGCTCCTGTCATTATATTTGTTGATGAAGTTGACAGTTTGCTTGGTGCTCGAGGTGGTGCTTTTGAACATGAGGCCACCAGAAGAATGAGGAATGAGTTCATGGCAGCGTGGGATGGATTAAGGTCGAAAGAAAACCAAAGAATCCTCATTCTTGGTGCAACAAACCGGCCATTCGACCTTGATGATGCTGTTATTCGTCGCTTACCAAGAAGGATATATGTTGATTTACCAGATGCTGAAAATCGAATGAAGATTTTAAGAATATTTCTTGCAAAAGAAAATTTGGATCCTGATTTTCAGTTTGATAAACTGGCTAACTTGACTGATGGATACTCTGGCAGTGATTTGAAGAACCTCTGTATTGCTGCAGCATATAGACCTGTTCAAGAGCTCTTAGAGGAAGAAAAGAAGGGAGGCAATGACGGTACTTCGGTATTAAGGCCTCTTAAGTTGGATGATTTTATTCAGTCAAAATCCAAGGTGGGTCCATCAGTTGCCTATGATGCAACAAGCATGAATGAGTTGAGGAAGTGGAATGAAATGTACGGAGAAGGCGGTGGTAGGACAAAATCACCATTTGGATTTGGGAGCTGA 3117 0.4055 MYFKRIQCRDRRWALLLQPSKYFYRPRFSDHPCSHSLSPETTVKEYASHGSIIRRHFLGSDSSRHALSRNSYTGLDKRCSLGLKSTQLQAYSSESDGRNASENKHVHVNDGANFDKGQNQQEKSREDAKNCNAHTRLGEQDQEEWLNNEKLAIESKRRESPFLTRKDKFKNEFLRRIVPWEKINISWDTFPYHIHEHTKNLLVECAASHLRHNKFASSFGTRLTSSSGRILLQSIPGTELYRERLVRALAQDLQVPLLVLDSNILAPYDIDDDLSSDYESDDDNVESGEDGSLESENEDDNDASNEEEWTSSADAKSDASDNEDALASAEAALKKVKAAVQKLVPYNVEEFEKQITSGESESSESSKSNDAKSSDKSGCQLRKGDRVKYIGPSVQVKADDRIILGKIMTSDGPTNAYTIIHGRWVALTNGQRGEVYEVNGDLVAVLLDNNEDRANEVENLNNNQTEPPIYWIHVKDIENDLDAQSQDCYIAVEALCEVLHSKQPLIVYFPDSSQWLHRAVPKSNRSEFFNKVEEMFDKLSGPIVLICGQNKVQSGSKEKEQFTMILPNFGRVAKLPLSLKRLTEGYKGGKTSEDDEINKLFSNVLSIQPPKDENVLGTFKKQLEDDRKIVISRSNLNELRKVLEEHQLSCMDLLHVNTDGIILTKQKAEKVVGWAKNHYLSSCLLPSIKGERLCLPRESLEIAISRLKGMETMSRKPSQSLKNLAKDEFESNFISAVVPPGEIGVKFDDIGALEDVKKALNELVILPMGRPELFCHGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMAAWDGLRSKENQRILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAKENLDPDFQFDKLANLTDGYSGSDLKNLCIAAAYRPVQELLEEEKKGGNDGTSVLRPLKLDDFIQSKSKVGPSVAYDATSMNELRKWNEMYGEGGGRTKSPFGFGS. 1039
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g00588 1038 Coils Coil 443 463 - -
Seca5g00588 1038 MobiDBLite consensus disorder prediction 273 323 - -
Seca5g00588 1038 MobiDBLite consensus disorder prediction 90 129 - -
Seca5g00588 1038 Pfam ATPase family associated with various cellular activities (AAA) 786 916 IPR003959 GO:0005524|GO:0016887
Seca5g00588 1038 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 745 975 IPR027417 -
Seca5g00588 1038 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 168 1031 - -
Seca5g00588 1038 Pfam AAA+ lid domain 939 974 IPR041569 -
Seca5g00588 1038 MobiDBLite consensus disorder prediction 309 323 - -
Seca5g00588 1038 MobiDBLite consensus disorder prediction 273 307 - -
Seca5g00588 1038 MobiDBLite consensus disorder prediction 365 379 - -
Seca5g00588 1038 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 744 920 - -
Seca5g00588 1038 Gene3D - 745 1020 IPR027417 -
Seca5g00588 1038 SMART AAA_5 782 919 IPR003593 GO:0016887
Seca5g00588 1038 ProSitePatterns AAA-protein family signature. 889 908 IPR003960 GO:0005524|GO:0016887
Seca5g00588 1038 MobiDBLite consensus disorder prediction 353 379 - -
Seca5g00588 1038 Gene3D - 918 1002 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g00588 Seca-Chr5 13697839 13725956 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g00588 780 981 Calmodulin-binding Proteins AT3G56690 35.577 8.94e-32 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g00588 - - gmx:100802939 1686.39